scholarly journals Chirality and Relativistic Effects in Os3(CO)12

Molecules ◽  
2021 ◽  
Vol 26 (11) ◽  
pp. 3333
Author(s):  
Maxim R. Ryzhikov ◽  
Irina V. Mirzaeva ◽  
Svetlana G. Kozlova ◽  
Yuri V. Mironov

The energy and structural parameters were obtained for all forms of the carbonyl complex of osmium Os3(CO)12 with D3h and D3 symmetries using density functional theory (DFT) methods. The calculations took into account various levels of relativistic effects, including those associated with nonconservation of spatial parity. It was shown that the ground state of Os3(CO)12 corresponds to the D3 symmetry and thus may be characterized either as left-twisted (D3S) or right-twisted (D3R). The D3S↔D3R transitions occur through the D3h transition state with an activation barrier of ~10–14 kJ/mol. Parity violation energy difference (PVED) between D3S and D3R states equals to ~5 × 10−10 kJ/mol. An unusual three-center exchange interaction was found inside the {Os3} fragment. It was found that the cooperative effects of the mutual influence of osmium atoms suppress the chirality of the electron system in the cluster.

Author(s):  
Kenneth G. Dyall ◽  
Knut Faegri

The wave function is an elusive and somewhat mysterious object. Nobody has ever observed the wave function directly: rather, its existence is inferred from the various experiments whose outcome is most rationally explained using a wave function interpretation of quantum mechanics. Further, the N-particle wave function is a rather complicated construction, depending on 3N spatial coordinates as well as N spin coordinates, correlated in a manner that almost defies description. By contrast, the electron density of an N-electron system is a much simpler quantity, described by three spatial coordinates and even accessible to experiment. In terms of the wave function, the electron density is expressed as . . . ρ(r) = N ∫ Ψ* (r1,r2,...,rN)Ψ (r1,r2,...,rN)dr2dr3 ...drN (14.1) . . . where the sum over spin coordinates is implicit. It might be much more convenient to have a theory based on the electron density rather than the wave function. The description would be much simpler, and with a greatly reduced (and constant) number of variables, the calculation of the electron density would hopefully be faster and less demanding. We also note that given the correct ground state density, we should be able to calculate any observable quantity of a stationary system. The answer to these hopes is density functional theory, or DFT. Over the past decade, DFT has become one of the most widely used tools of the computational chemist, and in particular for systems of some size. This success has come despite complaints about arbitrary parametrization of potentials, and laments about the absence of a universal principle (other than comparison with experiment) that can guide improvements in the way the variational principle has led the development of wave-function-based methods. We do not intend to pursue that particular discussion, but we note as a historical fact that many important early contributions to relativistic quantum chemistry were made using DFT-like methods. Furthermore, there is every reason to try to extend the success of nonrelativistic DFT methods to the relativistic domain. We suspect that their potential for conquering a sizable part of this field is at least as large as it has been in the nonrelativistic domain.


2015 ◽  
Vol 68 (9) ◽  
pp. 1438 ◽  
Author(s):  
Zahra Azizi ◽  
Mehdi Ghambarian ◽  
Mohammad A. Rezaei ◽  
Mohammad Ghashghaee

Various saturated five-membered N,X-heterocyclic carbenes (X = N, O, S, P, Si, C, and B) have been studied by ab initio and density functional theory (DFT) methods. The substitutions alter the properties of the reference carbene from the viewpoint of electronic structure, stability, nucleophilicity, and basicity. Our study shows that the oxygen containing carbene (X = O) induces the highest HOMO–LUMO energy gap (ΔEHOMO–LUMO), while carbene with X = N has the widest singlet–triplet energy difference (ΔEs–t). The nucleophilicity of the carbene derivatives increased upon replacement of C, Si, and B, with the effect of the boron substituent being more pronounced. In addition, the basicity of the structure increased for the carbene derivatives with X = C and B with the latter substitution imposing a remarkably higher effect. Moreover, the substitution of boron at the α-position of the carbene increased the nucleophilicity and basicity, while inducing a reduction in the values of ΔEs–t and ΔEHOMO–LUMO.


2011 ◽  
Vol 8 (s1) ◽  
pp. S195-S202
Author(s):  
Y. Belhocine ◽  
M. Bencharif

The structure and spectroscopic properties of polycyclic aromatic ligands of 2,3,6,7,10,11-hexakis (alkylthio) triphenylene (alkyl: methyl, ethyl, and isopropyl; corresponding to the abbreviations of the molecules: HMTT, HETT and HiPTT) were studied using density functional theory (DFT) and time dependent density functional theory (TD-DFT) methods with triple-zeta valence polarization (TZVP) basis set. It was shown that the type of functional theory used, Becke-Perdew (BP) and Leeuwen-Baerends (LB94) implemented in Amsterdam Density functional (ADF) program package, does not have essential influence on the geometry of studied compounds in both ground and excited states. However, significant differences were obtained for the band gap values with relativistic effects of the zero order regular approximation scalar corrections (ZORA) and LB94 functional seems to reproduce better the experimental optical band gap of these systems.


2020 ◽  
pp. 2150162
Author(s):  
Asif Mahmood ◽  
Waheed Al-Masry ◽  
M. Nabil Anwar ◽  
M. Mufakkar Adaam ◽  
Ghalib ul Islam ◽  
...  

By using the density functional theory (DFT), we explored ferromagnetic and electronic transport aspects of CaM2S4 (M = Ti, Cr) spinels. For both spinels, we used PBEsol generalized gradient approximation (GGA) to investigate structural parameters and noted that studied spinels are good compared with the existing parameters. A novel exchange correlation potential, modified Becke and Johnson (mBJ), was utilized for the investigation of electronic, magnetic and transport aspects because we assure our predicting results of electronic bandgap to be consistent to the experiments. The energy difference between ferromagnetic and nonmagnetic states is calculated to check the structural stability of ferromagnetic state. Further, the calculations of band structures and density of state have been explored to check ferromagnetic nature of semiconductor spinels that was further confirmed on the basis of exchange splitting energy and magnetic parameters. In addition, exchange constants ([Formula: see text] and [Formula: see text]) and crystal field energy [Formula: see text] along with magnetic moments were also calculated. Our calculated results of magnetic parameters indicate that these spinels are considered as suitable candidate for spintronic applications. Furthermore, to check the reliability of these spinels in energy storage systems, the electronic transport aspects were calculated in detail.


2009 ◽  
Vol 63 (5) ◽  
Author(s):  
Juraj Kóňa ◽  
Igor Tvaroška

AbstractCorrect prediction of the structure and energetics along the reaction pathway of the formation or dissociation of the glycosidic bond in sugar phosphates is crucial for the understanding of catalytic mechanism and for the determination of transition state structures of sugar-phosphate processing enzymes. The performance of seven density functional theory (DFT) methods (BLYP, B3LYP, MPW1PW91, MPW1K, MPWB1K, M05 and M05-2X) and two wave function methods (HF and MP2) was tested using four structural models with the activated sugar-phosphate α-glycosidic linkage. The models were chosen based on the crystal structure of the retaining glycosyltransferase LgtC complex with methyl α-d-galactopyranose diphosphate and its 2-fluoro derivative. Results of the MP2 method were used as a benchmark for the other methods. Two structural trends were observed in the calculations: predicted length of the activated C1-O1 glycosidic bond of 1.49–1.63 Å was significantly larger than values of a standard C1-O1 glycosidic bond in crystal structures of carbohydrates (1.39–1.48 Å), and the calculated value depended on the DFT method used. The MPW1K, M05 and M05-2X functionals provided results in closest agreement with those from the MP2 method, the difference being less than 0.02 Å in the calculated glycosidic bond lengths. On the contrary, the BLYP and B3LYP functionals failed to predict sugar diphosphate in the (-sc) conformation as a stable structure. Instead, the only stationary points localized along the C1-O1 dissociation coordinate were oxocarbenium ions at the distance of approximately 2.8 Å. The M05-2X, MPW1K and MPWB1K functionals gave the most reasonable prediction of the thermochemical kinetic parameters, where the formation of the oxocarbenium ion has a slightly endothermic character (0.4–1.7 kJ mol−1) with an activation barrier of 7.9–9.2 kJ mol−1.


2016 ◽  
Vol 57 (8) ◽  
pp. 1640
Author(s):  
Y. Umar ◽  
J. Tijani ◽  
S. Abdalla

The molecular structures, conformational stabilities, and infrared vibrational wavenumbers of 2-thiophenecarboxaldehyde and 3-thiophenecarboxaldehyde are computed using Becke-3—Lee—Yang—Parr (B3LYP) with the 6-311++G** basis set. From the computations, cis-2-thiophenecarboxaldehyde is found to be more stable than the transfer conformer with an energy difference of 1.22 kcal/mol, while trans-3-thiophenecarboxaldehyde is found to be more stable than the cis conformer by 0.89 kcal/mol. The computed dipole moments, structural parameters, relative stabilities of the conformers and infrared vibrational wavenumbers of the two molecules coherently support the experimental data in the literature. The normal vibrational wavenumbers are characterized in terms of the potential energy distribution using the VEDA4 program. The effect of solvents on the conformational stability of the molecules in nine different solvents is investigated using the polarizable continuum model.


2011 ◽  
Vol 10 (03) ◽  
pp. 325-348 ◽  
Author(s):  
ANNA IGNACZAK

Detailed comparative analysis of properties of the tert-butyl radical and cation is performed using 14 density functional (DFT) methods combined with double-zeta and triple-zeta quality Gaussian basis sets with polarization and diffuse functions. Stability of different conformers is discussed. Structural parameters, dipole moment, adiabatic ionization potential (IP), inversion barrier and isotropic hyperfine coupling constants are examined and compared to values obtained at the standard MP2 level and to experimental data available. All methods indicate that that the CC bond in the radical is longer than in the cation by about 0.033 Å. The IP values are found to be very sensitive to the method used and range from 612 to 709 kJ/mol, but majority oscillate around 646÷656 kJ/mol. Calculated inversion barrier for the radical is higher than the experimental estimate of 2.68 kJ/mol; with the 6-311++G** basis set and most DFT methods it is predicted in the range 3.86÷4.82 kJ/mol. All DFT methods predict for the out-of-plane CC3 bending mode of the radical the frequency around 260 cm-1, while in the cation the corresponding frequency is higher by about 180 cm-1.


2017 ◽  
Vol 16 (04) ◽  
pp. 1750036
Author(s):  
Xiyuan Sun ◽  
Jiguang Du

The structures, electronic properties, bonding characters and UV–Vis spectra of [Formula: see text] ([Formula: see text]–[Formula: see text]) transition-metal phthalocyanines (TMPcs) molecules have been studied with different density function theory (DFT) methods. The calculated structural parameters agree well with previous experimental or theoretical values. Natural Population Analysis (NPA) charge revealed that [Formula: see text]–[Formula: see text] hybridizations occur when [Formula: see text] TM atoms are involved in chemical bondings. The spin magnetic moments of TMPcs are mainly from the contribution of [Formula: see text] electrons. Conceptual density functional theory (CDFT) results indicate that [Formula: see text] TMPcs molecules are willing to accept further electrons. The TM–N chemical bonds show very weak covalent nature, and are consistent with bond order analyses. Time-dependent density function theory (TD-DFT) calculations were carried out to simulate the UV–Vis spectra, and corresponding electronic transfers for dominant peaks were also obtained.


2015 ◽  
Vol 14 (01) ◽  
pp. 1550001 ◽  
Author(s):  
Yasin Gholiee ◽  
Sadegh Salehzadeh

Density functional theory (DFT) using PBE, PBE1PBE, B3P86, B97-1, and BHandHLYP functionals as well as MP2 calculations employing the TZVP basis set were used to study the formation of four host–guest complexes with formula [ H 3 L ⋯ X ]2+ ( X = F -, Cl -, Br -, and I -). The result of calculations on the structural parameters of [ H 3 L ⋯ Cl ]2+ shows that the calculated data with BHandHLYP functional have the best agreement with the experimental data and all five DFT methods give the better result than MP2. The largest amounts of interaction energies between the halide anions and protonated macrocycle were also calculated by PBE functional. The results show the following trend for the formation of complexes in the gas phase: [ H 3 L ⋯ F ]2+ > [ H 3 L ⋯ Cl ]2+ > [ H 3 L ⋯ Br ]2+ > [ H 3 L ⋯ I ]2+. Formation of the complexes in solution also shows the above trend where the [ H 3 L ⋯ Br ]2+ and [ H 3 L ⋯ I ]2+ complexes have positive [Formula: see text] values and probably cannot be formed.


2020 ◽  
Vol 85 (8) ◽  
pp. 1033-1046
Author(s):  
Morteza Yavari ◽  
S. Beyramabadi ◽  
Ali Morsali ◽  
Mohammad Bozorgmehr

Herein, (E)-4-{[(2-amino-5-chlorophenyl)imino]methyl}-5-(hydroxymethyl)- 2-methylpyridin-3-ol [HL] Schiff base and its [Cu(L)Cl] complex were newly synthesized and characterized by several spectroscopic methods. In addition, density functional theory (DFT) methods were used for investigation of the tautomerization of the HL Schiff base, structural parameters of HL and [Cu(L)Cl] species, assignment of the IR vibrational bands and the NMR chemical shifts as well as natural bond orbital (NBO) analyses. The most stable tautomer of the HL Schiff base is the enol form of the meta isomer. The optimized geometry of the free HL Schiff base is not planar. The L- acts as a N2O tridentate ligand, which is bonded to Cu2+ via the deprotonated phenolic oxygen, and the amine and azomethine nitrogens. The [Cu(L)Cl] has a square planar geometry in which the chloro ligand occupies the fourth coordination position. The DFT-computed values are in good consistency with the corresponding experimental values, confirming the suitability of the optimized geometries for HL and [Cu(L)Cl] species. According to the high-energy gaps, these compounds are stable. The atoms in molecule (AIM) analysis was used to evaluate strength of the bonding interactions and electron densities in structure of the compounds.


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