Faculty Opinions recommendation of Schizosaccharomyces pombe Ddb1 recruits substrate-specific adaptor proteins through a novel protein motif, the DDB-box.

Author(s):  
Hanjo Hellmann
2008 ◽  
Vol 28 (22) ◽  
pp. 6746-6756 ◽  
Author(s):  
Yasunori Fukumoto ◽  
Naoshi Dohmae ◽  
Fumio Hanaoka

ABSTRACT DDB1 was isolated as a UV-damaged DNA-binding protein, but recent studies established that it plays a role as a component of cullin 4A ubiquitin ligases. Cullin-RING complexes are the largest known ubiquitin ligase family, with hundreds of substrate-specific adaptor subunits and which are defined by characteristic motifs. A common motif for DDB1/cullin 4 ubiquitin ligases, a WDXR motif, was recently reported. Here, we show that Schizosaccharomyces pombe Ddb1 associates with several WD40 repeat proteins that share a novel protein motif designated the DDB-box, a motif essential for interaction with Ddb1 and independent of WD40 repeats, unlike the WDXR motif. We also show that ddb1 + and the putative CSA homolog ckn1 + are involved in transcription-coupled nucleotide excision repair and that the DDB-box is essential for the ckn1 + function in vivo. These data indicate that the DDB-box is another common motif which defines adaptor proteins for DDB1/cullin 4 ubiquitin ligases.


2017 ◽  
Vol 45 (6) ◽  
pp. 3323-3340 ◽  
Author(s):  
Yirong Wang ◽  
Jianhua Yan ◽  
Qingzhen Zhang ◽  
Xuting Ma ◽  
Juan Zhang ◽  
...  

2005 ◽  
Vol 25 (1) ◽  
pp. 172-184 ◽  
Author(s):  
John Sergeant ◽  
Elaine Taylor ◽  
Jan Palecek ◽  
Maria Fousteri ◽  
Emily A. Andrews ◽  
...  

ABSTRACT The rad18 gene of Schizosaccharomyces pombe is an essential gene that is involved in several different DNA repair processes. Rad18 (Smc6) is a member of the structural maintenance of chromosomes (SMC) family and, together with its SMC partner Spr18 (Smc5), forms the core of a high-molecular-weight complex. We show here that both S. pombe and human Smc5 and -6 interact through their hinge domains and that four independent temperature-sensitive mutants of Rad18 (Smc6) are all mutated at the same glycine residue in the hinge region. This mutation abolishes the interactions between the hinge regions of Rad18 (Smc6) and Spr18 (Smc5), as does mutation of a conserved glycine in the hinge region of Spr18 (Smc5). We purified the Smc5-6 complex from S. pombe and identified four non-SMC components, Nse1, Nse2, Nse3, and Rad62. Nse3 is a novel protein which is related to the mammalian MAGE protein family, many members of which are specifically expressed in cancer tissue. In initial steps to understand the architecture of the complex, we identified two subcomplexes containing Rad18-Spr18-Nse2 and Nse1-Nse3-Rad62. The subcomplexes are probably bridged by a weaker interaction between Nse2 and Nse3.


2003 ◽  
Vol 28 (2) ◽  
pp. 66-69 ◽  
Author(s):  
Myriam Roussigne ◽  
Sophia Kossida ◽  
Anne-Claire Lavigne ◽  
Thomas Clouaire ◽  
Vincent Ecochard ◽  
...  

2012 ◽  
Vol 442 (3) ◽  
pp. 573-581 ◽  
Author(s):  
Julia P. Vainonen ◽  
Pinja Jaspers ◽  
Michael Wrzaczek ◽  
Airi Lamminmäki ◽  
Ramesha A. Reddy ◽  
...  

Transcriptional regulation of gene expression is one major determinant of developmental control and stress adaptation in virtually all living organisms. In recent years numerous transcription factors controlling various aspects of plant life have been identified. The activity of transcription factors needs to be regulated to prevent unspecific, prolonged or inappropriate responses. The transcription factor DREB2A (DEHYDRATION-RESPONSIVE ELEMENT BINDING 2A) has been identified as one of the main regulators of drought and heat responses, and it is regulated through protein stability. In the present paper we describe evidence that the interaction with RCD1 (RADICAL-INDUCED CELL DEATH 1) contributes to the control of DREB2A under a range of conditions. The interaction is mediated by a novel protein motif in DREB2A and a splice variant of DREB2A which lacks the interaction domain accumulates during heat stress and senescence. In addition RCD1 is rapidly degraded during heat stress, thus our results suggest that removal of RCD1 protein or the loss of the interaction domain in DREB2A appears to be required for proper DREB2A function under stress conditions.


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