Faculty Opinions recommendation of The nature of selection during plant domestication.

Author(s):  
Loren Rieseberg ◽  
Hannes Dempewolf
Keyword(s):  
Author(s):  
Rajanikanth Govindarajulu ◽  
Ashley N Hostetler ◽  
Yuguo Xiao ◽  
Srinivasa R Chaluvadi ◽  
Margarita Mauro-Herrera ◽  
...  

Abstract Phenotypes such as branching, photoperiod sensitivity, and height were modified during plant domestication and crop improvement. Here, we perform quantitative trait locus (QTL) mapping of these and other agronomic traits in a recombinant inbred line (RIL) population derived from an interspecific cross between Sorghum propinquum and Sorghum bicolor inbred Tx7000. Using low-coverage Illumina sequencing and a bin-mapping approach, we generated ∼1920 bin markers spanning ∼875 cM. Phenotyping data were collected and analyzed from two field locations and one greenhouse experiment for six agronomic traits, thereby identifying a total of 30 QTL. Many of these QTL were penetrant across environments and co-mapped with major QTL identified in other studies. Other QTL uncovered new genomic regions associated with these traits, and some of these were environment-specific in their action. To further dissect the genetic underpinnings of tillering, we complemented QTL analysis with transcriptomics, identifying 6189 genes that were differentially expressed during tiller bud elongation. We identified genes such as Dormancy Associated Protein 1 (DRM1) in addition to various transcription factors that are differentially expressed in comparisons of dormant to elongating tiller buds and lie within tillering QTL, suggesting that these genes are key regulators of tiller elongation in sorghum. Our study demonstrates the usefulness of this RIL population in detecting domestication and improvement-associated genes in sorghum, thus providing a valuable resource for genetic investigation and improvement to the sorghum community.


The Holocene ◽  
2015 ◽  
Vol 25 (12) ◽  
pp. 1965-1978 ◽  
Author(s):  
Li Liu ◽  
Neil A Duncan ◽  
Xingcan Chen ◽  
Guoxiang Liu ◽  
Hao Zhao

2021 ◽  
Author(s):  
Femke Augustijns ◽  
Nils Broothaerts ◽  
Gert Verstraeten

<p>Within eastern Africa, Ethiopia stands out for its steep topography, resulting in an altitudinal zonation of climate and vegetation. To understand future vegetation changes, we need information on past vegetation covers and vegetation responses to environmental and climatic changes. Pollen studies are available for low and high elevations in Ethiopia, but they are low in number and limited in spatial coverage. In addition, explicit research to altitudinal patterns of environmental changes are missing. However, archaeological evidence from SW Ethiopia suggests vertical migration of humans in response to humidity fluctuations, highlighting the need for research to spatial dynamics of human activities and vegetation in Ethiopia. On the other hand, sedimentological evidence suggests a millennia long agricultural history in Ethiopia’s highlands and several authors identify this region as a center of plant domestication. </p><p>It is clear that a thorough understanding of the past vegetation cover and its alteration by humans and climate is missing for Ethiopia. These research gaps impede identification of the timing and location of the onset of agriculture in the ancient Ethiopian landscape, resulting in poor understanding of e.g. contemporary degraded landforms. In our study, we aim to reconstruct and quantify the vegetation history along an altitudinal gradient in the Southern Ethiopian Rift Valley and to identify the role of man and climate on this evolution. Therefore, several lakes and swamps are selected as study sites along an altitudinal gradient (1100-3000 m a.s.l.) in the Gamo Highlands near the city of Arba Minch, along the Southern Ethiopian Rift Valley. Here, we will present the results of pollen, charcoal and NPP analyses from two wetland sites situated at 2300 and 3000 m a.s.l. The records show an increase of Afromontane forest taxa around 13 ka BP, at the expense of Montane ericaceous taxa. At 8 ka BP, a shift in the composition of the Afromontane forest is observed, together with a change in the fungal assemblage and decrease of grasses. Around 6 ka BP, Wooded grassland taxa increase simultaneously with <em>Delitschia</em> fungal spores. Montane forest taxa increase again at 2.5 ka BP, together with a shift in fungal spores, followed by an increase in charcoal accumulation during the last millennium. Most of the observed transitions can be linked to other vegetation records from Ethiopia, and reflect responses to climatic changes such as the African Humid Period. However, the exact timing and  nature of the vegetation changes differs substantially between records, and asks for a denser sampling of palaeoecological records across Ethiopia. In this study, we will link the reconstructed vegetation changes with anthropogenic and natural driving forces, and come up with a reconstruction of the long-term landscape development in the study area in SW Ethiopia.   </p>


2021 ◽  
Author(s):  
Steve Govinda Udai Naraine

Cannabis sativa L. has been domesticated for fibre, oilseed, and marijuana; it also occurs as ruderal plants. “Marijuana” refers to plants selected for high concentrations of the chemical tetrahydrocannabinol (THC), while “hemp” refers to plants low in concentration of THC and which are domesticated for either stem fibre or oilseed. In my first chapter I review the botany of cannabis, taxonomy and origins, ethnobotany, and crop ferality. In my second chapter, I performed a study where achenes (“seeds”) from herbarium collections representative of these classes of C. sativa were assessed for variation in morphological characters and pericarp resistance to fracture. Multivariate analysis of the data revealed significant divergence among the groups. In contrast to ruderal plants, domesticated plants (hemp or marijuana) possessed achenes that are significantly longer, heavier, covered with a less adherent perianth, and lacking a pronounced basal attenuation. These characteristics reflect traits that are advantageous in domesticated plants, and are consistent with the "domestication syndrome”. Marijuana achenes, in comparison with hemp achenes, are shorter and darker. Achenes of fibre cultivars are larger than the achenes of oilseed cultivars. Achenes of dioecious oilseed cultivars are larger than the achenes of monoecious oilseed cultivars. We propose several mechanisms by which this phenotypic divergence may have occurred, including potential differences in outcrossing rate and the evolution of life history strategies among C. sativa groups that deserve further exploration. While only one species of Cannabis merits recognition, we postulate these phenotypic differences in C. sativa are a result of domestication for different purposes. In my final chapter I discuss the limitations and future studies. This work contributes a more complete understanding of cannabis morphology to the greater body of literature on plant domestication.


Author(s):  
Alex Baumel ◽  
Gonzalo Nieto Feliner ◽  
Frederic Medail ◽  
Stefano La Malfa ◽  
Mario Diguardo ◽  
...  

Intense research efforts on phylogeography over the last two decades uncovered major biogeographical trends and renewed our understandings of plant domestication in the Mediterranean. We aim to investigate the evolutionary history and the origin of domestication of the carob tree that has been cultivated for millennia for food and fodder. We used >1000 microsatellite genotypes to identify carob evolutionary units (CEUs) based on genetic diversity structure and geography. We investigated genome-wide diversity and evolutionary patterns of the CEUs with 3557 SNPs generated by restriction-site associated DNA sequencing (RADseq). The 56 populations sampled across the Mediterranean basin, classified as natural, semi-natural or cultivated, were examined. Although, RADseq data are consistent with previous studies identifying a strong West-to-East genetic structure and considerable admixture in some geographic parts, we reconstructed a new phylogeographic scenario with two migration routes occurring from a single refugium likely located in South-Western Morocco. Our results do not favour the regionally bound or single origin of domestication. Indeed, our findings support a cultivation model of locally selected wild genotypes, albeit punctuated by long-distance westward dispersals of domesticated varieties by humans, concomitant with major cultural waves by Romans and Arabs in the regions of dispersal. Ex-situ efforts to preserve carob genetic resources should prioritize accessions from both western and eastern populations, with emphasis on the most differentiated CEUs situated in South-Western Morocco, South Spain and Eastern Mediterranean. Our study underscores the relevance of natural and seminatural habitats of Mediterranean forests and their refugia in the conservation efforts of tree crops.


2017 ◽  
pp. 77
Author(s):  
Rafael Lira ◽  
Alejandro Casas

Information on use and management of wild species of Cucurbitaceae is presented, in order to analyze processes of incipient plant domestication. Ibervillea millspaughii is a perennial plant species with massive roots, distributed from Tamaulipas to Belize. Roots of this species are utilized as medicine in the treatment of arthritis, inflammations and muscular pain. Roots are commonly collected from individuals in wild populations, but, in some villages of Quinatana Roo people tolerate and enhance individuals of this plant species in anthropogenic areas; also, people cultivate this plant species in home gardens. Melothria pendula is distributed from the United States to Argentina. Fruits and young stems and leaves of this species are consumed as food and used in traditional medicine. These products are generally gathered from wild or weedy populations, but in La Montaña de Guerrero region, the tolerance of this species and the intentional dispersion of its seeds in anthropogenic areas are also common, in order to increase its availability. Use and propagation of this plant species may involve selection by people who distinguish between "bitter" and "sweet" variants, preferring the "sweet" ones. Sicyos parviflorus, Cyclanthera dissecta, C. langaei and C. ribiflora are consumed as greens by people in different regions of Mexico, who gather them from wild or weedy populations, although individual plants of these species are also tolerated in anthropogenic areas. The different forms of management identified in the species mentioned are possibly causing processes of domestication, but such processes are yet to be evaluated.


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