Key Amino Acids in Understanding Evolutionary Characterization of Mn/Fe-Superoxide Dismutase: A Phylogenetic and Structural Analysis of Proteins from Corynebacterium and Hosts

2017 ◽  
Vol 1 (1) ◽  
Author(s):  
Oliveira Alberto ◽  
Teixeira Pammella ◽  
Barh Debmalya ◽  
Ghosh Preetam ◽  
Azevedo Vasco
Keyword(s):  
Amino Acids ◽  
Superoxide Dismutase ◽  
Structural Analysis

Characterization of an iron-containing superoxide dismutase from a higher plant, Citrus limonum

1994 ◽  
Vol 90 (2) ◽  
pp. 339-347 ◽  
Author(s):  
Maria S. Almansa ◽  
Luis A. del Rio ◽  
Francisca Sevilla
Keyword(s):  
Superoxide Dismutase ◽  
Higher Plant ◽  
Citrus Limonum

Partial Purification and Characterization of Superoxide Dismutase from Tomato (Lycopersicon esculentum) Fruit

2004 ◽  
Vol 9 (3) ◽  
pp. 283-288 ◽  
Author(s):  
Sunil Kumar ◽  
Santosh Dhillon ◽  
Dharam Singh ◽  
Randhir Singh
Keyword(s):  
Superoxide Dismutase ◽  
Lycopersicon Esculentum ◽  
Partial Purification ◽  
Purification And Characterization

Post-proline endopeptidase, further characterization of the enzyme from pig kidneys

1984 ◽  
Vol 49 (8) ◽  
pp. 1846-1853 ◽  
Author(s):  
Karel Hauzer ◽  
Tomislav Barth ◽  
Linda Servítová ◽  
Karel Jošt
Keyword(s):  
Amino Acids ◽  
Aspartic Acid ◽  
Ion Exchange Chromatography ◽  
Exchange Chromatography ◽  
Relative Molecular Mass ◽  
Enzyme Molecule ◽  
Thiol Compounds ◽  
Modified Method ◽  
N Terminus

A post-proline endopeptidase (EC 3.4.21.26) was isolated from pig kidneys using a modified method described earlier. The enzyme was further purified by ion exchange chromatography on DEAE-Sephacel. The final product contained about 95% of post-proline endopeptidase. The enzyme molecule consisted of one peptide chain with a relative molecular mass of 65 600 to 70 000, containing a large proportion of acidic and alifatic amino acids (glutamic acid, aspartic acid and leucine) and the N-terminus was formed by aspartic acid or asparagine. In order to prevent losses of enzyme activity, thiol compounds has to be added.

scholarly journals Characterization of UV-screening compounds, mycosporine-like amino acids, and scytonemin in the cyanobacteriumLyngbyasp. CU2555

2013 ◽  
Vol 87 (1) ◽  
pp. 244-256 ◽  
Author(s):  
Rajesh P. Rastogi ◽  
Aran Incharoensakdi
Keyword(s):  
Amino Acids

scholarly journals Avoided motifs: short amino acid strings missing from protein datasets

2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Pablo Mier ◽  
Miguel A. Andrade-Navarro
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Protein Function ◽  
Large Protein ◽  
New Approach ◽  
Cellular Context ◽  
Human Proteins ◽  
Context Specific ◽  
Protein Datasets

Abstract According to the amino acid composition of natural proteins, it could be expected that all possible sequences of three or four amino acids will occur at least once in large protein datasets purely by chance. However, in some species or cellular context, specific short amino acid motifs are missing due to unknown reasons. We describe these as Avoided Motifs, short amino acid combinations missing from biological sequences. Here we identify 209 human and 154 bacterial Avoided Motifs of length four amino acids, and discuss their possible functionality according to their presence in other species. Furthermore, we determine two Avoided Motifs of length three amino acids in human proteins specifically located in the cytoplasm, and two more in secreted proteins. Our results support the hypothesis that the characterization of Avoided Motifs in particular contexts can provide us with information about functional motifs, pointing to a new approach in the use of molecular sequences for the discovery of protein function.

scholarly journals Genetic and Molecular Characterization of sting, a Gene Involved in Crystal Formation and Meiotic Drive in the Male Germ Line of Drosophila melanogaster

Genetics ◽  
1999 ◽  
Vol 151 (2) ◽  
pp. 749-760 ◽  
Author(s):  
Armin Schmidt ◽  
Gioacchino Palumbo ◽  
Maria P Bozzetti ◽  
Patrizia Tritto ◽  
Sergio Pimpinelli ◽  
...  
Keyword(s):  
Amino Acids ◽  
Drosophila Melanogaster ◽  
Null Allele ◽  
Germ Line ◽  
Meiotic Drive ◽  
P Element ◽  
Crystal Formation ◽  
Male Sterile ◽  
Male Sterile Mutation

Abstract The sting mutation, caused by a P element inserted into polytene region 32D, was isolated by a screen for male sterile insertions in Drosophila melanogaster. This sterility is correlated with the presence of crystals in spermatocytes and spermatids that are structurally indistinguishable from those produced in males carrying a deficiency of the Y-linked crystal (cry) locus. In addition, their morphology is needle-like in Ste+ flies and star-shaped in Ste flies, once again as observed in cry– males. The sti mutation leads to meiotic drive of the sex chromosomes, and the strength of the phenomenon is correlated with the copy number of the repetitive Ste locus. The same correlation is also true for the penetrance of the male sterile mutation. A presumptive sti null allele results in male sterility and lethal maternal effect. The gene was cloned and shown to code for a putative protein that is 866 amino acids long. A C-terminal domain of 82 amino acids is identified that is well conserved in proteins from different organisms. The gene is expressed only in the germline of both sexes. The interaction of sting with the Ste locus can also be demonstrated at the molecular level. While an unprocessed 8-kb Ste primary transcript is expressed in wild-type males, in X/Y homozygous sti males, as in X/Y cry– males, a 0.7-kb mRNA is produced.

Characterization of a Plasmodium vivax Cysteine Proteinase Gene Identifies Uniquely Conserved Amino Acids that May Mediate the Substrate Specificity of Malarial Hemoglobinases

1994 ◽  
Vol 241 (2) ◽  
pp. 312-316 ◽  
Author(s):  
Philip J. Rosenthal ◽  
Christine S. Ring ◽  
Xiaowu Chen ◽  
Fred E. Cohen
Keyword(s):  
Amino Acids ◽  
Substrate Specificity ◽  
Plasmodium Vivax ◽  
Cysteine Proteinase ◽  
Conserved Amino Acids

MECHANICAL CHARACTERIZATION OF MATERIALS AND DIAGNOSIS OF STRUCTURES BY INVERSE ANALYSES: SOME INNOVATIVE PROCEDURES AND APPLICATIONS

2014 ◽  
Vol 11 (03) ◽  
pp. 1343002 ◽  
Author(s):  
GIULIO MAIER ◽  
VLADIMIR BULJAK ◽  
TOMASZ GARBOWSKI ◽  
GIUSEPPE COCCHETTI ◽  
GIORGIO NOVATI
Keyword(s):  
Structural Analysis ◽  
Digital Image Correlation ◽  
Residual Stresses ◽  
Mechanical Characterization ◽  
Image Correlation ◽  
Alkali Silica Reaction ◽  
Compression Tests ◽  
Material Models ◽  
Characterization Of Materials

A survey is presented herein of some recent research contributions to the methodology of inverse structural analysis based on statical tests for diagnosis of possibly damaged structures and for mechanical characterization of materials in diverse industrial environments. The following issues are briefly considered: identifications of parameters in material models and of residual stresses on the basis of indentation experiments; mechanical characterization of free-foils and laminates by cruciform and compression tests and digital image correlation measurements; diagnosis, both superficially and in depth, of concrete dams, possibly affected by alkali-silica-reaction or otherwise damaged.

Spectroscopic Characterization of Recombinant Cu,Zn Superoxide Dismutase fromPhotobacterium leiognathiExpressed inEscherichia coli:  Evidence for a Novel Catalytic Copper Binding Site

Biochemistry ◽  
1997 ◽  
Vol 36 (23) ◽  
pp. 7109-7113 ◽  
Author(s):  
Dolly Foti ◽  
Bruno Lo Curto ◽  
Giovanni Cuzzocrea ◽  
M. Elena Stroppolo ◽  
Francesca Polizio ◽  
...  
Keyword(s):  
Superoxide Dismutase ◽  
Binding Site ◽  
Spectroscopic Characterization ◽  
Copper Binding ◽  
Inescherichia Coli
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