High-throughput genotyping by DHPLC of the dihydropyrimidine dehydrogenase gene implicated in (fluoro)pyrimidine catabolism

Author(s):  
Eva Gross ◽  
Katharina Seck ◽  
Steffi Neubauer ◽  
Jutta Mayr ◽  
Heide Hellebrand ◽  
...  
2021 ◽  
Author(s):  
Brendan T. Keenan ◽  
Raymond J. Galante ◽  
Jie Lian ◽  
Lin Zhang ◽  
Xiaofeng Guo ◽  
...  

1998 ◽  
Vol 44 (11) ◽  
pp. 1106-1109 ◽  
Author(s):  
Thomas P West

A reductive pathway of uracil catabolism was shown to be functioning in Escherichia coli B ATCC 11303 by virtue of thin-layer chromatographic and enzyme analyses. A mutant defective in uracil catabolism was isolated from this strain and subsequently characterized. The three enzyme activities associated with the reductive pathway of pyrimidine catabolism were detectable in the wild-type E. coli B cells, while the mutant strain was found to be deficient for dihydropyrimidine dehydrogenase activity. The dehydrogenase was shown to utilize NADPH as its nicotinamide cofactor. Growth of ATCC 11303 cells on uracil or glutamic acid instead of ammonium sulfate as a nitrogen source increased the reductive pathway enzyme activities. The mutant strain exhibited increased catabolic enzyme activities after growth on ammonium sulfate or glutamic acid.Key words: uracil catabolism, dihydropyrimidine dehydrogenase, reductive pathway, mutant, Escherichia coli.


Author(s):  
André B.P. van Kuilenburg ◽  
Judith Meijer ◽  
Michael W.T. Tanck ◽  
Doreen Dobritzsch ◽  
Lida Zoetekouw ◽  
...  

2019 ◽  
Vol 37 (4_suppl) ◽  
pp. 545-545 ◽  
Author(s):  
Saad Awan ◽  
Girijesh K. Patel ◽  
Anu Singh Maharjan ◽  
Gwendolyn A. McMillin ◽  
William R. Taylor ◽  
...  

545 Background: Fluoropyrimidines are antimetabolites that target the S phase of the cell cycle. The active metabolite, 5-fluorodeoxyuridine monophosphate inhibits thymidylate synthase (TS) enzyme, thus preventing DNA synthesis and ultimately cell death. While controversy exists in the literature, polymorphism in the promoter region of thymidylate synthase gene (TYMS) that decrease TS expression has been associated with increased fluoropyrimidines-associated toxicities. This study explored the association between polymorphism in the promoter region of TYMS gene and fluoropyrimidines-associated toxicities in patients with gastrointestinal malignancies with mixed racial background. Methods: Between 2011 and 2018, 126 patients were genotyped for TYMS. Patients with known high-risk dihydropyrimidine dehydrogenase gene variants were excluded. Fluoropyrimidines-associated toxicity was graded according to the National Cancer Institiute Common Terminology Criteria for Adverse Events (v 5.0). Fisher’s exact test was used for statistical analysis. Results: TYMS genotypes that predict increased TS expression (3RG/3RG, 3RG/3RC, 2R/3RG, 2R/4R, 3R/4R, 4R/3RG) were identified in 55 patients (44%). TYMS genotypes that predict decreased TS expression (2R/2R, 2R/3RC, 3RC/3RC) were seen in 71 patients (56%). Among patients with genotypes that predict increased TS expression (N = 55), 12 patients had grade 3-4 toxicity (22%) while among patients with genotypes that predict decreased TS expression, 30 patients had grade 3-4 toxicities (42%) (P = 0.0219). Compared to patients with genotypes predicting increased TS expression, 17 out of 31 patients (55%) with 2R/2R TYMS genotype had grade 3-4 toxicity (P = 0.0039) and 15 out 40 patients (38%) with 2R/3RC and 3RC/3RC TYMS genotype had grade 3-4 toxicity (P = 0.1108). Among patients with 2R/2R TYMS, Caucasians represented 61% and African Americans represented 39%. Females represented 65% of the patients. Conclusions: Polymorphism in the promoter region of TYMS gene that predict decreased TS expression due to 2R/2R variant was associated with grade 3-4 fluoropyrimidines-associated toxicities.


2007 ◽  
Vol 45 (9-10) ◽  
pp. 713-724 ◽  
Author(s):  
Yoshihiro Okamoto ◽  
Akihito Ueta ◽  
Satoshi Sumi ◽  
Tetsuya Ito ◽  
Yumiko Okubo ◽  
...  

2008 ◽  
Vol 27 (6-7) ◽  
pp. 809-815 ◽  
Author(s):  
A. B. P. van Kuilenburg ◽  
J. Meijer ◽  
D. Dobritzsch ◽  
B. Lohkamp ◽  
W. Ruitenbeek ◽  
...  

PLoS ONE ◽  
2008 ◽  
Vol 3 (12) ◽  
pp. e4003 ◽  
Author(s):  
Eva Gross ◽  
Birgit Busse ◽  
Matthias Riemenschneider ◽  
Steffi Neubauer ◽  
Katharina Seck ◽  
...  

2003 ◽  
Vol 14 (2) ◽  
pp. 341-342 ◽  
Author(s):  
A.B.P. van Kuilenburg ◽  
J.W. Baars ◽  
R. Meinsma ◽  
A.H. van Gennip

2021 ◽  
Author(s):  
Kelly E. Sullivan ◽  
Sheetal Kumar ◽  
Xin Liu ◽  
Ye Zhang ◽  
Emily Koning ◽  
...  

Abstract Pyrimidine catabolism is implicated in hepatic steatosis. Dihydropyrimidine Dehydrogenase (DPYD) is an enzyme responsible for uracil and thymine catabolism, and DPYD human genetic variability affects clinically observed toxicity following 5-Fluorouracil (5-FU) administration. In an in vitro model of diet-induced steatosis, the pharmacologic inhibition of DPYD resulted in protection from lipid accumulation. Additionally, a gain-of-function mutation of DPYD, created through clustered regularly interspaced short palindromic repeats associated protein 9 (CRISPR-Cas9) engineering, led to an increased lipid burden, which was associated with altered mitochondrial functionality in a hepatocarcionma cell line. The studies presented herein describe a novel role for DPYD in hepatocyte metabolic regulation as a modulator of hepatic steatosis.


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