scholarly journals Theoretical and empirical conversion factors for determining bacterial production in freshwater sediments via leucine incorporation

2005 ◽  
Vol 3 (2) ◽  
pp. 101-107 ◽  
Author(s):  
Nanna Buesing ◽  
Jürgen Marxsen
Keyword(s):  
Bacterial Production ◽  
Leucine Incorporation ◽  
Freshwater Sediments ◽  
Conversion Factors

scholarly journals Empirical Leucine-to-Carbon Conversion Factors for Estimating Heterotrophic Bacterial Production: Seasonality and Predictability in a Temperate Coastal Ecosystem

2009 ◽  
Vol 75 (10) ◽  
pp. 3216-3221 ◽  
Author(s):  
Alejandra Calvo-D�az ◽  
Xos� Anxelu G. Mor�n
Keyword(s):  
Protein Synthesis ◽  
Bacterial Production ◽  
Heterotrophic Bacteria ◽  
Spatiotemporal Variability ◽  
Leucine Incorporation ◽  
Carbon Conversion ◽  
Conversion Factors ◽  
Production Studies ◽  
Favorable Conditions

ABSTRACT Leucine-to-carbon conversion factors (CFs) are needed for converting substrate incorporation into biomass production of heterotrophic bacteria. During 2006 we performed 20 dilution experiments for determining the spatiotemporal variability of empirical CFs in temperate Atlantic coastal waters. Values (0.49 to 1.92 kg C mol Leu−1) showed maxima in autumn to early winter and minima in summer. Spatially averaged CFs were significantly negatively correlated with in situ leucine incorporation rates (r = −0.91) and positively correlated with phosphate concentrations (r = 0.76). These relationships, together with a strong positive covariation between cell-specific leucine incorporation rates and carbon contents (r = 0.85), were interpreted as a strategy to maximize survival through protein synthesis and low growth rates under nutrient limitation (low CFs) until favorable conditions stimulate cell division relative to protein synthesis (high CFs). A multiple regression with in situ leucine incorporation rates and cellular carbon contents explained 96% of CF variance in our ecosystem, suggesting their potential prediction from more easily measurable routine variables. The use of the theoretical CF of 1.55 kg C mol Leu−1 would have resulted in a serious overestimation (73%) of annual bacterial production rates. Our results emphasize the need for considering the temporal scale in CFs for bacterial production studies.

[methyl-3H]Thymidine and [3H]leucine incorporation in Vibrio spp. grown in nutrient-limited continuous cultures

1994 ◽  
Vol 40 (5) ◽  
pp. 375-381 ◽  
Author(s):  
Richard A. Snyder ◽  
Richard D. Robarts ◽  
Douglas E. Caldwell
Keyword(s):  
Cell Volume ◽  
Bacterial Production ◽  
Conversion Factor ◽  
De Novo ◽  
Leucine Incorporation ◽  
Continuous Cultures ◽  
Average Cell ◽  
Conversion Factors ◽  
Significant Difference ◽  
Number Of Bacteria

Vibrio alginolyticus, Vibrio logei, Vibrio natriegens, and Vibrio neries were grown in nutrient-limited continuous cultures at generation times (TD) of 5–135 h on complex media with cell yields of 0.8–12 × 106 bacteria/mL. Average cell volume, as determined by image analysis of video fluorescence microscopy, decreased for V. logei and V. neries, did not change for V. alginolyticus, and increased for V. natriegens with increasing TD. The increase in cell volume observed for V. natriegens was due to the development of filamentous cells. Batch cultures were grown on media with 10 times the nutrient concentration of continuous cultures. Tritiated thymidine incorporation was measured using phenol–chloroform extractions; leucine incorporation was measured in trichloroacetic acid precipitates. At concentrations of exogenous thymidine high enough to inhibit de novo synthesis of thymidine, the number of bacteria produced per mole of thymidine incorporated did not vary with changing generation time, or between batch and continuous cultures examined in this study. However, the number of bacteria produced per mole of leucine incorporated decreased per unit production with increasing TD for all four vibrios. A significant difference in the bacterial production conversion factor (bacteria produced per mole of label incorporated) for thymidine was found for V. neries relative to the three other Vibrio species, but no significant differences were found between growth conditions within species. Corrections for biovolume differences between species and growth rates reduced variability in conversion factors, and also yielded a significantly different conversion factor for V. neries. Conversion factors for leucine incorporation spanned three orders of magnitude, from 1015 to 1018 bacteria/mol of leucine incorporated.Key words: leucine, thymidine, bacterial production, chemostats.

scholarly journals Heterotrophic bacterial production in the South East Pacific: longitudinal trends and coupling with primary production

2007 ◽  
Vol 4 (4) ◽  
pp. 2761-2791 ◽  
Author(s):  
F. Van Wambeke ◽  
I. Obernosterer ◽  
T. Moutin ◽  
S. Duhamel ◽  
O. Ulloa ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Primary Production ◽  
Bacterial Production ◽  
South Pacific ◽  
Leucine Incorporation ◽  
The South ◽  
Phytoplankton Primary Production ◽  
East Pacific ◽  
Wide Range ◽  
South Pacific Gyre

Abstract. Spatial variations of heterotrophic bacterial production and phytoplankton primary production were investigated across South East Pacific Ocean (–141° W, –8° S to –72° W, –35° S) in November–December 2004. Bacterial production (³H leucine incorporation) integrated over the euphotic zone encompassed a wide range of values, from 43 mg C m−2 d−1 in the hyper-oligotrophic South Pacific Gyre to 392 mg C m−2 d−1 in the upwelling off Chile. Within the gyre (120° W, 22° S) records of low phytoplankton biomass (7 mg TChla m−2) were obtained and in situ 14C based particulate primary production rates were as low as 153 mg C m−2 d−1, thus equal to the value considered as a limit for primary production under strong oligotrophic conditions. In the South Pacific gyre average rates of ³H leucine incorporation rates, and leucine incorporation rates per cell (5–21 pmol L−1 h−1 and 15–56×10−21 mol cell−1 h−1, respectively), were in the same range as those reported for other oligotrophic sub tropical and temperate waters. Rates of dark community respiration, determined at selected stations across the transect varied in a narrow range (42–97 mmol O2 m−2 d−1), except for one station in the upwelling off Chile (245 mmol O2 m−2 d−1). Bacterial growth efficiencies varied between 5 and 38% and bacterial carbon demand largely exceeded 14C particulate primary production across the South Pacific Ocean. Net community production also revealed negative values in the South Pacific Gyre (–13±20 to –37±40 mmol O2 m−2 d−1). Such imbalances being impossible in this area far from any external input, we discuss the techniques involved for determining the coupling between primary production and bacterial heterotrophic production.

scholarly journals Characteristics of a SAR11 strain grown in batch and continuous culture

2018 ◽  
Author(s):  
Scott R. Grant ◽  
Matthew J. Church ◽  
Sara Ferrón ◽  
Edward A. Laws ◽  
Michael S. Rappé
Keyword(s):  
Continuous Culture ◽  
Bacterial Production ◽  
P Uptake ◽  
Cellular Growth ◽  
Leucine Incorporation ◽  
Natural Seawater ◽  
Organic C ◽  
The Mean ◽  
Ocean Ecosystem ◽  
Specific Growth Rates

AbstractIn this study, a strain of SAR11 subgroup IIIa (termed HIMB114) isolated from the tropical Pacific Ocean was grown in seawater-based batch and continuous culture in order to quantify cellular features and metabolism relevant to SAR11 ecology. We report the first direct measurements of cellular elemental quotas for nitrogen (N) and phosphorus (P) for SAR11: 1.4 ± 0.9 fg N and 0.44 ± 0.01 fg P, respectively, that were consistent with the small size of HIMB114 cells (average volume of 0.09 µm3). However, the mean carbon (C) cellular quota of 50 ± 47 fg C was anomalously high, but variable. Rates of phosphate (PO43-) uptake measured from both batch and continuous cultures were exceptionally slow: in chemostats growing at 0.3 d−1, HIMB114 took up 1.1 ± 0.3 amol P cell−1d−1, suggesting that <30% of the cellular P requirement of HIMB114 was met by PO43-assimilation. The mean rate of leucine incorporation, a measure of bacterial production, during late log phase growth of batch HIMB114 cultures was 0.042 ± 0.02 amol Leu cell−1h−1. While only weakly correlated with changes in specific growth rates, the onset of stationary phase resulted in decreases in cell-specific leucine incorporation that were proportional to changes in growth rate. Rates of cellular production, respiratory oxygen consumption, and changes in total organic C concentrations constrained cellular growth efficiencies to 13 ± 4%. Hence, despite the small, streamlined genome and diminutively sized cells, SAR11 strain HIMB114 appears to grow at efficiencies similar to naturally occurring bacterioplankton communities.ImportanceWhile SAR11 bacteria contribute a significant fraction to the total picoplankton biomass in the ocean and likely are major players in organic C and nutrient cycling, the cellular characteristics and metabolic features of most lineages have either been only hypothesized from genomes or otherwise not measured in controlled laboratory experimentation. The dearth of data on even the most basic characteristics for what is arguably the most abundant heterotroph in seawater has limited the specific consideration of SAR11 in ocean ecosystem modeling efforts. In this study, we provide measures of cellular P, N, C, aerobic respiration and bacterial production for a SAR11 strain growing in natural seawater media that can be used to directly relate these features of SAR11 to biogeochemical cycling in the oceans. Through the development of a chemostat system to measure nutrient uptake during steady-state growth, we have also documented inorganic P uptake rates that allude to the importance of organic phosphorous to meet cellular P demands, even in the presence of non-limiting PO43-concentrations.

scholarly journals Bacterioplankton abundance, biomass and production in a Brazilian coastal lagoon and in two German lakes

2001 ◽  
Vol 73 (1) ◽  
pp. 39-49 ◽  
Author(s):  
ANDRÉ L. S. FURTADO ◽  
PETER CASPER ◽  
FRANCISCO A. ESTEVES
Keyword(s):  
Bacterial Production ◽  
Bacterial Abundance ◽  
Bacterial Biomass ◽  
Isotopic Dilution ◽  
Leucine Incorporation ◽  
Temperate Lakes ◽  
Tropical Lagoon ◽  
Organic Carbon Concentration ◽  
Micro Organisms ◽  
Bacterioplankton Abundance

The bacterioplanktonic abundance, biomass, and production within a tropical lagoon (Cabiúnas, Brazil) and two temperate lakes (Stechlin and Dagow, Germany) were compared. Bacterial abundance and production were significantly different among the three water bodies. The lowest bacterial production ( 0.8mug C l-1 d-1) was observed in the tropical Cabiúnas Lagoon despite its higher mean temperature and dissolved organic carbon concentration. Highest bacterioplankton abundance ( 2.6 x 10(9) cells l-1) and production ( 68.5mug C l-1 d-1) were measured in eutrophic Lake Dagow. In oligotrophic Lake Stechlin, the lowest bacterial biomass ( 48.05mug C l-1) was observed because of lower bacterial biovolume ( 0.248mum³) and lower bacterial abundance. Bacterial populations in the temperate lakes show higher activity (production/biomass ratio) than in the tropical lagoon. The meaning of isotopic dilution and leucine incorporation by non-bacterial micro-organisms were evaluated in the oligotrophic temperate system. Leucine uptake by non-bacterial micro-organisms did not have significant influence on bacterial production.

scholarly journals Elemental Composition, Phosphorous Uptake, and Characteristics of Growth of a SAR11 Strain in Batch and Continuous Culture

mSystems ◽  
2019 ◽  
Vol 4 (4) ◽  
Author(s):  
Scott R. Grant ◽  
Matthew J. Church ◽  
Sara Ferrón ◽  
Edward A. Laws ◽  
Michael S. Rappé
Keyword(s):  
Continuous Culture ◽  
Bacterial Production ◽  
P Uptake ◽  
Cellular Growth ◽  
Leucine Incorporation ◽  
Natural Seawater ◽  
Organic C ◽  
The Mean ◽  
Ocean Ecosystem ◽  
Specific Growth Rates

ABSTRACTIn this study, a strain of SAR11 subgroup IIIa (termed HIMB114) was grown in seawater-based batch and continuous culture in order to quantify cellular features and metabolism relevant to SAR11 ecology. We report some of the first direct measurements of cellular elemental quotas for nitrogen (N) and phosphorus (P) for SAR11, grown in batch culture: 1.4 ± 0.9 fg N and 0.44 ± 0.01 fg P, respectively, that were consistent with the small size of HIMB114 cells (average volume of 0.09 μm3). However, the mean carbon (C) cellular quota of 50 ± 47 fg C was anomalously high, but variable. The rates of phosphate (PO43−) uptake measured from both batch and continuous cultures were exceptionally slow: in chemostats growing at 0.3 day−1, HIMB114 took up 1.1 ± 0.3 amol P cell−1day−1, suggesting that <30% of the cellular P requirement of HIMB114 was met by PO43−assimilation. The mean rate of leucine incorporation, a measure of bacterial production, during late-log-phase growth of batch HIMB114 cultures was 0.042 ± 0.02 amol Leu cell−1h−1. While only weakly correlated with changes in specific growth rates, the onset of stationary phase resulted in decreases in cell-specific leucine incorporation that were proportional to changes in growth rate. The rates of cellular production, respiratory oxygen consumption, and changes in total organic C concentrations constrained cellular growth efficiencies to 13% ± 4%. Hence, despite a small genome and diminutively sized cells, SAR11 strain HIMB114 appears to grow at efficiencies similar to those of naturally occurring bacterioplankton communities.IMPORTANCEWhile SAR11 bacteria contribute a significant fraction to the total picoplankton biomass in the ocean and likely are major players in organic C and nutrient cycling, the cellular characteristics and metabolic features of most lineages have either only been hypothesized from genomes or otherwise not measured in controlled laboratory experimentation. The dearth of data on even the most basic characteristics for what is arguably the most abundant heterotroph in seawater has limited the specific consideration of SAR11 in ocean ecosystem modeling efforts. In this study, we provide measures of cellular P, N, and C, aerobic respiration, and bacterial production for a SAR11 strain growing in natural seawater medium that can be used to directly relate these features of SAR11 to biogeochemical cycling in the oceans. Through the development of a chemostat system to measure nutrient uptake during steady-state growth, we have also documented inorganic P uptake rates that allude to the importance of organic phosphorous to meet cellular P demands, even in the presence of nonlimiting PO43−concentrations.

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