scholarly journals Coupling physics and biogeochemistry thanks to high resolution observations of the phytoplankton community structure in the North-Western Mediterranean Sea

2017 ◽  
Author(s):  
Pierre Marrec ◽  
Andrea M. Doglioli ◽  
Gérald Grégori ◽  
Mathilde Dugenne ◽  
Alice Della Penna ◽  
...  
Keyword(s):  
High Resolution ◽  
Surface Waters ◽  
Phytoplankton Community ◽  
Western Mediterranean ◽  
Fine Scale ◽  
Phytoplankton Community Structure ◽  
The North ◽  
Cold Core ◽  
North Western

Abstract. Fine-scale physical structures and ocean dynamics strongly influence and regulate biogeochemical and ecological processes. These processes are particularly challenging to describe and understand because of their ephemeral nature. The OSCAHR (Observing Submesoscale Coupling At High Resolution) campaign has been conducted in fall 2015 in which, a fine-scale structure in the North Western Mediterranean Ligurian subbasin was pre-identified using both satellite and numerical modeling data. Along the ship track, various variables were measured at the surface (temperature, salinity, chlorophyll-a and nutrients concentrations) with ADCP current velocity. We also deployed a new model of CytoSense automated flow cytometer (AFCM) optimized for small and dim cells, for near real-time characterization of surface phytoplankton community structure of surface waters with a spatial resolution of few km and a hourly temporal resolution. For the first time with this type of AFCM we were able to resolve Prochlorococcus and Synechococcus picocyanobacteria. The vertical physical dynamics and biogeochemical properties of the studied area were investigated by continuous high resolution CTD profiles thanks to a moving vessel profiler (MVP) during the vessel underway associated to a 1-m vertical resolution pumping system deployed during fixed stations. The observed fine-scale feature presented a cyclonic structure with a relatively cold core surrounded by warmer waters. Surface waters were totally depleted in nitrate and phosphate. In addition to the doming of the isopycnals by the cyclonic circulation, an intense wind event induced Ekman pumping. The upwelled subsurface cold nutrient-rich water fertilized surface waters, characterized by an increase in Chl-a concentration. Prochlorococcus, pico- and nano-eukaryotes were more abundant in cold core waters while Synechococcus dominated in warm boundary waters. Nanoeukaryote were the main contributors (> 50 %) in terms of pigment content (FLR) and biomass. Biological observations based on the mean cell's red fluorescence recorded by AFCM combined with physical properties of surface waters suggest a distinct origin for two warm boundary waters. Finally, the application of a matrix growth population model based on high-frequency AFCM measurements in warm boundary surface waters provides estimates of in-situ growth rate and apparent net primary production for Prochlorococcus (μ = 0.21 d−1, NPP = 0.11 mgC m−3 d−1) and Synechococcus (μ = 0.72 d−1, NPP = 2.68 mgC m−3 d−1), which corroborate their opposite surface distribution pattern. The innovative adaptive strategy applied during OSCAHR with a combination of several multidisciplinary and complementary approaches involving high-resolution in-situ observations and sampling, remote-sensing and model simulations provided a deeper understanding of the marine biogeochemical dynamics through the first trophic levels.

scholarly journals Coupling physics and biogeochemistry thanks to high-resolution observations of the phytoplankton community structure in the northwestern Mediterranean Sea

2018 ◽  
Vol 15 (5) ◽  
pp. 1579-1606 ◽  
Author(s):  
Pierre Marrec ◽  
Gérald Grégori ◽  
Andrea M. Doglioli ◽  
Mathilde Dugenne ◽  
Alice Della Penna ◽  
...  
Keyword(s):  
Community Structure ◽  
High Resolution ◽  
Surface Waters ◽  
Phytoplankton Community ◽  
Fine Scale ◽  
Phytoplankton Community Structure ◽  
Red Fluorescence ◽  
Cold Core ◽  
Northwestern Mediterranean

Abstract. Fine-scale physical structures and ocean dynamics strongly influence and regulate biogeochemical and ecological processes. These processes are particularly challenging to describe and understand because of their ephemeral nature. The OSCAHR (Observing Submesoscale Coupling At High Resolution) campaign was conducted in fall 2015 in which a fine-scale structure (1–10 km∕1–10 days) in the northwestern Mediterranean Ligurian subbasin was pre-identified using both satellite and numerical modeling data. Along the ship track, various variables were measured at the surface (temperature, salinity, chlorophyll a and nutrient concentrations) with ADCP current velocity. We also deployed a new model of the CytoSense automated flow cytometer (AFCM) optimized for small and dim cells, for near real-time characterization of the surface phytoplankton community structure of surface waters with a spatial resolution of a few kilometers and an hourly temporal resolution. For the first time with this optimized version of the AFCM, we were able to fully resolve Prochlorococcus picocyanobacteria in addition to the easily distinguishable Synechococcus. The vertical physical dynamics and biogeochemical properties of the studied area were investigated by continuous high-resolution CTD profiles thanks to a moving vessel profiler (MVP) during the vessel underway associated with a high-resolution pumping system deployed during fixed stations allowing sampling of the water column at a fine resolution (below 1 m). The observed fine-scale feature presented a cyclonic structure with a relatively cold core surrounded by warmer waters. Surface waters were totally depleted in nitrate and phosphate. In addition to the doming of the isopycnals by the cyclonic circulation, an intense wind event induced Ekman pumping. The upwelled subsurface cold nutrient-rich water fertilized surface waters and was marked by an increase in Chl a concentration. Prochlorococcus and pico- and nano-eukaryotes were more abundant in cold core waters, while Synechococcus dominated in warm boundary waters. Nanoeukaryotes were the main contributors (>50 %) in terms of pigment content (red fluorescence) and biomass. Biological observations based on the mean cell's red fluorescence recorded by AFCM combined with physical properties of surface waters suggest a distinct origin for two warm boundary waters. Finally, the application of a matrix growth population model based on high-frequency AFCM measurements in warm boundary surface waters provides estimates of in situ growth rate and apparent net primary production for Prochlorococcus (μ=0.21 d−1, NPP =0.11 mgCm-3d-1) and Synechococcus (μ=0.72 d−1, NPP =2.68 mgCm-3d-1), which corroborate their opposite surface distribution pattern. The innovative adaptive strategy applied during OSCAHR with a combination of several multidisciplinary and complementary approaches involving high-resolution in situ observations and sampling, remote-sensing and model simulations provided a deeper understanding of the marine biogeochemical dynamics through the first trophic levels.

scholarly journals Observing and modelling phytoplankton community structure in the North Sea

2017 ◽  
Vol 14 (6) ◽  
pp. 1419-1444 ◽  
Author(s):  
David A. Ford ◽  
Johan van der Molen ◽  
Kieran Hyder ◽  
John Bacon ◽  
Rosa Barciela ◽  
...  
Keyword(s):  
Community Structure ◽  
North Sea ◽  
Phytoplankton Community ◽  
Marine Biodiversity ◽  
Phytoplankton Community Structure ◽  
Pigment Analysis ◽  
The North ◽  
The North Sea ◽  
In Situ Observations

Abstract. Phytoplankton form the base of the marine food chain, and knowledge of phytoplankton community structure is fundamental when assessing marine biodiversity. Policy makers and other users require information on marine biodiversity and other aspects of the marine environment for the North Sea, a highly productive European shelf sea. This information must come from a combination of observations and models, but currently the coastal ocean is greatly under-sampled for phytoplankton data, and outputs of phytoplankton community structure from models are therefore not yet frequently validated. This study presents a novel set of in situ observations of phytoplankton community structure for the North Sea using accessory pigment analysis. The observations allow a good understanding of the patterns of surface phytoplankton biomass and community structure in the North Sea for the observed months of August 2010 and 2011. Two physical–biogeochemical ocean models, the biogeochemical components of which are different variants of the widely used European Regional Seas Ecosystem Model (ERSEM), were then validated against these and other observations. Both models were a good match for sea surface temperature observations, and a reasonable match for remotely sensed ocean colour observations. However, the two models displayed very different phytoplankton community structures, with one better matching the in situ observations than the other. Nonetheless, both models shared some similarities with the observations in terms of spatial features and inter-annual variability. An initial comparison of the formulations and parameterizations of the two models suggests that diversity between the parameter settings of model phytoplankton functional types, along with formulations which promote a greater sensitivity to changes in light and nutrients, is key to capturing the observed phytoplankton community structure. These findings will help inform future model development, which should be coupled with detailed validation studies, in order to help facilitate the wider application of marine biogeochemical modelling to user and policy needs.

scholarly journals High-resolution analysis of a North Sea phytoplankton community structure based on in situ flow cytometry observations and potential implication for remote sensing

2015 ◽  
Vol 12 (13) ◽  
pp. 4051-4066 ◽  
Author(s):  
M. Thyssen ◽  
S. Alvain ◽  
A. Lefèbvre ◽  
D. Dessailly ◽  
M. Rijkeboer ◽  
...  
Keyword(s):  
Flow Cytometry ◽  
Community Structure ◽  
North Sea ◽  
High Frequency ◽  
Phytoplankton Community ◽  
Phytoplankton Community Structure ◽  
The North ◽  
The North Sea ◽  
Daily Scale

Abstract. Phytoplankton observation in the ocean can be a challenge in oceanography. Accurate estimations of its biomass and dynamics will help to understand ocean ecosystems and refine global climate models. Relevant data sets of phytoplankton defined at a functional level and on a sub-meso- and daily scale are thus required. In order to achieve this, an automated, high-frequency, dedicated scanning flow cytometer (SFC, Cytobuoy b.v., the Netherlands) has been developed to cover the entire size range of phytoplankton cells whilst simultaneously taking pictures of the largest of them. This cytometer was directly connected to the water inlet of a PocketFerryBox during a cruise in the North Sea, 08–12 May 2011 (DYMAPHY project, INTERREG IV A "2 Seas"), in order to identify the phytoplankton community structure of near surface waters (6 m) with a high spatial resolution basis (2.2 ± 1.8 km). Ten groups of cells, distinguished on the basis of their optical pulse shapes, were described (abundance, size estimate, red fluorescence per unit volume). Abundances varied depending on the hydrological status of the traversed waters, reflecting different stages of the North Sea blooming period. Comparisons between several techniques analysing chlorophyll a and the scanning flow cytometer, using the integrated red fluorescence emitted by each counted cell, showed significant correlations. For the first time, the community structure observed from the automated flow cytometry data set was compared with PHYSAT reflectance anomalies over a daily scale. The number of matchups observed between the SFC automated high-frequency in situ sampling and remote sensing was found to be more than 2 times better than when using traditional water sampling strategies. Significant differences in the phytoplankton community structure within the 2 days for which matchups were available suggest that it is possible to label PHYSAT anomalies using automated flow cytometry to resolve not only dominant groups but also community structure.

Coastal climatology of the North-Western Mediterranean area for long-term and short-term risk assessment.

2020 ◽  
Author(s):  
Carlo Brandini ◽  
Stefano Taddei ◽  
Valentina Vannucchi ◽  
Michele Bendoni ◽  
Bartolomeo Doronzo ◽  
...  
Keyword(s):  
Risk Assessment ◽  
High Resolution ◽  
Mediterranean Area ◽  
Western Mediterranean ◽  
Climate Trends ◽  
Short Term ◽  
The North ◽  
The Mediterranean ◽  
North Western

<p>In this work we present the results obtained through a dynamic downscaling of the ERA5 reanalysis dataset (hindcast) of ECMWF, using high-resolution meteorological and wave models defined on unstructured computation grids along the Mediterranean coasts, with a particular focus on the North-Western Mediterranean area. Downscaling of the ERA5 meteorological data is obtained through the BOLAM and MOLOCH models (up to a resolution of 2.5 km) which force an unstructured WW3 model with a resolution of up to 500 m along the coast. Models were validated through available meteorological stations, wave buoy data and X-band wave radars, the latter for the purposes of wave spectra validation.</p><p>On the one hand, this allowed, by extracting the time series of some attack parameters of the waves along the coast, and according to the type of coast (rocky coasts, sandy coasts, coastal structures etc.), to compute the return periods and to characterize the impact of any individual storm. On the other hand, it is possible to highlight some trends observed in the last 30 years, during which recent research is showing an increasing evidence  of some changes in global circulation at regional to local scales. These changes also include effects of wind rotation, wave regimes, storm surges, wave-induced coastal currents and coastal morphodynamics. For example, in the North-Western Mediterranean extreme events belonging to cyclonic weather-types circulation with stronger S-SE components (like the storm of October 28-30th 2018 and many others), rather than events associated with perturbations of Atlantic origin and zonal circulation, are becoming more frequent. These long-term wind/wave climate trends can have consequences not only in the assessment of long-term risk due to main morphodynamic variations (ie. coastal erosion), but also in the short-term risk assessment.</p><p>This work was funded by the EU MAREGOT project (2017-2020) and ECMWF Special Project spitbran  “Evaluation of coastal climate trends in the Mediterranean area by means of high-resolution and multi-model downscaling of ERA5 reanalysis” (2018-2020).</p>

scholarly journals Impact of moderately energetic fine-scale dynamics on the phytoplankton community structure in the western Mediterranean Sea

2021 ◽  
Vol 18 (24) ◽  
pp. 6455-6477
Author(s):  
Roxane Tzortzis ◽  
Andrea M. Doglioli ◽  
Stéphanie Barrillon ◽  
Anne A. Petrenko ◽  
Francesco d'Ovidio ◽  
...  
Keyword(s):  
Mediterranean Sea ◽  
Phytoplankton Community ◽  
World Ocean ◽  
Western Mediterranean ◽  
Water Masses ◽  
Ocean Dynamics ◽  
Western Boundary ◽  
Fine Scale ◽  
Western Mediterranean Sea

Abstract. Model simulations and remote sensing observations show that ocean dynamics at fine scales (1–100 km in space, day–weeks in time) strongly influence the distribution of phytoplankton. However, only a few in situ-based studies at fine scales have been performed, and most of them concern western boundary currents which may not be representative of less energetic regions. The PROTEVSMED-SWOT cruise took place in the moderately energetic waters of the western Mediterranean Sea (WMS), in the region south of the Balearic Islands. Taking advantage of near-real-time satellite information, we defined a sampling strategy in order to cross a frontal zone separating different water masses. Multi-parametric in situ sensors mounted on the research vessel, on a towed vehicle and on an ocean glider were used to sample physical and biogeochemical variables at a high spatial resolution. Particular attention was given to adapting the sampling route in order to estimate the vertical velocities in the frontal area also. This strategy was successful in sampling quasi-synoptically an oceanic area characterized by the presence of a narrow front with an associated vertical circulation. A multiparametric statistical analysis of the collected data identifies two water masses characterized by different abundances of several phytoplankton cytometric functional groups, as well as different concentrations of chlorophyll a and O2. Here, we focus on moderately energetic fronts induced by fine-scale circulation. Moreover, we explore physical–biological coupling in an oligotrophic region. Our results show that the fronts induced by the fine-scale circulation, even if weaker than the fronts occurring in energetic and nutrient-rich boundary current systems, maintain nevertheless a strong structuring effect on the phytoplankton community by segregating different groups at the surface. Since oligotrophic and moderately energetic regions are representative of a very large part of the world ocean, our results may have global significance when extrapolated.

scholarly journals Long-distance mobility in the North-Western Mediterranean during the Neolithic transition using high resolution pottery sourcing

2019 ◽  
Vol 28 ◽  
pp. 102050 ◽  
Author(s):  
Marzia Gabriele ◽  
Fabien Convertini ◽  
Chrystele Verati ◽  
Bernard Gratuze ◽  
Suzanne Jacomet ◽  
...  
Keyword(s):  
High Resolution ◽  
Western Mediterranean ◽  
Long Distance ◽  
Neolithic Transition ◽  
The North ◽  
North Western
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