Optimization of SIMS-based stable isotope measurements with regression diagnostics

Author(s):  
Martin Schobben ◽  
Lubos Polerecky

<p>Stable isotope measurements with secondary ion mass spectrometry (SIMS) have become an increasingly popular tool for Earth scientists to investigate natural phenomena such as biomineralization and sediment diagenesis, or to track the fate of labelled tracers in stable isotope probing experiments. The random nature of secondary ions emitted from a sample is described by Poisson statistics, which can be used to predict the precision of SIMS measurements under ideal circumstances (e.g., the predicted standard error can be deduced from the total counts of secondary ions). However, besides this fundamental source of imprecision, real SIMS measurements are additionally affected by other factors such as sample heterogeneity, instrument instability, the development and geometry of the sputter pit, and sample charging. Although some of these biases can be avoided by proper instrument tuning and sample documentation (e.g. T/SEM to characterise the textural properties of a rock sample) prior to SIMS measurement, factors such as instrument instability or sample heterogeneity can never be fully eliminated. Here we propose a data treatment procedure capable of identifying the underlying cause of the loss of precision due to instrument instability and sample heterogeneity. The reduced chi-squared statistic, which compares the predicted precision with the precision derived from descriptive statistics, is traditionally used to flag problematic measurements but without pinpointing the cause of precision-loss. We constructed a more sensitive method by the application of regression diagnostics, which calculates the influence of outliers on the regression model, and thus allows for augmentation of the raw count data. Simulations show that the recalculated descriptive and predictive statistics deviate from the original precision along trajectories specific to sample heterogeneity and instrument instability. Thus the proposed diagnostic procedure increases information yield of SIMS isotope measurements.</p>

2010 ◽  
Vol 16 (S2) ◽  
pp. 426-427
Author(s):  
X Mayali ◽  
PK Weber ◽  
EL Brodie ◽  
S Mabery ◽  
PD Hoeprich ◽  
...  

Extended abstract of a paper presented at Microscopy and Microanalysis 2010 in Portland, Oregon, USA, August 1 – August 5, 2010.


2016 ◽  
Vol 26 (1-3) ◽  
pp. 195-210 ◽  
Author(s):  
Carsten Vogt ◽  
Tillmann Lueders ◽  
Hans H. Richnow ◽  
Martin Krüger ◽  
Martin von Bergen ◽  
...  

Stable isotope probing (SIP) techniques have become state-of-the-art in microbial ecology over the last 10 years, allowing for the targeted detection and identification of organisms, metabolic pathways and elemental fluxes active in specific processes within complex microbial communities. For studying anaerobic hydrocarbon-degrading microbial communities, four stable isotope techniques have been used so far: DNA/RNA-SIP, PLFA (phospholipid-derived fatty acids)-SIP, protein-SIP, and single-cell-SIP by nanoSIMS (nanoscale secondary ion mass spectrometry) or confocal Raman microscopy. DNA/RNA-SIP techniques are most frequently applied due to their most meaningful phylogenetic resolution. Especially using <sup>13</sup>C-labeled benzene and toluene as model substrates, many new hydrocarbon degraders have been identified by SIP under various electron acceptor conditions. This has extended the current perspective of the true diversity of anaerobic hydrocarbon degraders relevant in the environment. Syntrophic hydrocarbon degradation was found to be a common mechanism for various electron acceptors. Fundamental concepts and recent advances in SIP are reflected here. A discussion is presented concerning how these techniques generate direct insights into intrinsic hydrocarbon degrader populations in environmental systems and how useful they are for more integrated approaches in the monitoring of contaminated sites and for bioremediation.


Author(s):  
Bruno Schueler ◽  
Robert W. Odom

Time-of-flight secondary ion mass spectrometry (TOF-SIMS) provides unique capabilities for elemental and molecular compositional analysis of a wide variety of surfaces. This relatively new technique is finding increasing applications in analyses concerned with determining the chemical composition of various polymer surfaces, identifying the composition of organic and inorganic residues on surfaces and the localization of molecular or structurally significant secondary ions signals from biological tissues. TOF-SIMS analyses are typically performed under low primary ion dose (static SIMS) conditions and hence the secondary ions formed often contain significant structural information.This paper will present an overview of current TOF-SIMS instrumentation with particular emphasis on the stigmatic imaging ion microscope developed in the authors’ laboratory. This discussion will be followed by a presentation of several useful applications of the technique for the characterization of polymer surfaces and biological tissues specimens. Particular attention in these applications will focus on how the analytical problem impacts the performance requirements of the mass spectrometer and vice-versa.


Author(s):  
Pan Deng ◽  
Taylor Valentino ◽  
Michael D. Flythe ◽  
Hunter N. B. Moseley ◽  
Jacqueline R. Leachman ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document