Microsatellite Diversity and Complexity in Eighteen Staphylococcus Phage Genomes

2017 ◽  
Vol In Press (In Press) ◽  
Author(s):  
Chaudhary Mashhhood Alam ◽  
Asif Iqbal ◽  
Deepika Tripathi ◽  
Choudhary Sharfuddin ◽  
Safdar Ali
2017 ◽  
Vol 142 (4) ◽  
pp. 260-264
Author(s):  
Ping Li ◽  
Dong Liu ◽  
Min Guo ◽  
Yuemin Pan ◽  
Fangxin Chen ◽  
...  

Sexual reproduction in the plant parasite Phytophthora capsici Leonian requires the interaction of two distinct mating types, A1 and A2. Co-occurrence of these mating types can enhance the genetic diversity of P. capsici and alter its virulence or resistance characteristics. Using an intersimple sequence repeat (ISSR) screen of microsatellite diversity, we identified, cloned, and sequenced a novel 1121-base pair (bp) fragment specific to the A1 mating type of P. capsici. Primers Pcap-1 and Pcap-2 were designed from this DNA fragment to specifically detect the A1 mating type. Polymerase chain reaction (PCR) using these primers amplified an expected 997-bp fragment from known A1 mating types, but yielded a 508-bp fragment from known A2 mating types. This PCR-based assay could be adapted to accurately and rapidly detect the co-occurrence of A1 and A2 P. capsici mating types from field material.


2006 ◽  
Vol 125 (2) ◽  
pp. 125-130 ◽  
Author(s):  
T. Yifru ◽  
K. Hammer ◽  
X. Q. Huang ◽  
M. S. Roder

2000 ◽  
Vol 17 (6) ◽  
pp. 851-862 ◽  
Author(s):  
Youchun Li ◽  
Tzion Fahima ◽  
Abraham B. Korol ◽  
Junhua Peng ◽  
Marion S. R ◽  
...  

2016 ◽  
Vol 75 (1) ◽  
pp. 53-59 ◽  
Author(s):  
Marko Zebec ◽  
Marilena Idžojtić ◽  
Zlatko Šatović ◽  
Igor Poljak ◽  
Zlatko Liber

AbstractThe main objective of this research was to assess the genetic diversity of 5 natural field elm populations in Croatia. The study results suggest that the observed populations are characterized by a satisfactory amount of heterozygosity, and that the impact of the Dutch elm disease on the amount of genetic diversity in the sampled populations is currently negligible. However, one population displayed a significant excess of heterozygosity, implying a genetic bottleneck. The existence of a very clear genetic differentiation between the continental and the Mediterranean populations of Ulmus minor in Croatia was noticed.


Parasitology ◽  
2012 ◽  
Vol 139 (11) ◽  
pp. 1493-1505 ◽  
Author(s):  
M. ONDRAČKOVÁ ◽  
A. ŠIMKOVÁ ◽  
K. CIVÁŇOVÁ ◽  
M. VYSKOČILOVÁ ◽  
P. JURAJDA

SUMMARYSpecies introduced into new areas often show a reduction in parasite and genetic diversity associated to the limited number of founding individuals. In this study, we compared microsatellite and parasite diversity in both native (lower Danube) and introduced populations of 4 Ponto-Caspian gobies, including those (1) introduced from within the same river system (middle Danube; Neogobius kessleri and N. melanostomus), and (2) introduced from a different river system (River Vistula; N. fluviatilis and N. gymnotrachelus). Microsatellite data confirmed the lower Danube as a source population for gobies introduced into the middle Danube. Both native and introduced (same river system) populations of N. kessleri and N. melanostomus had comparable parasite species richness and microsatellite diversity, possibly due to multiple and/or continual migration/introduction of new individuals and the acquisition of local parasites. Reduced parasite species richness and microsatellite diversity were observed in introduced (different river system) populations in the Vistula. A low number of colonists found for N. fluviatilis and N. gymnotrachelus in the Vistula potentially resulted in reduced introduction of parasite species. Insufficient adaptation of the introduced host to local parasite fauna, together with introduction into an historically different drainage system, may also have contributed to the reduced parasite fauna.


2018 ◽  
Vol 45 (5) ◽  
pp. 1043-1053 ◽  
Author(s):  
Olivier Chassaing ◽  
Nathalie Desse-Berset ◽  
Catherine Hänni ◽  
Sandrine Hughes ◽  
Patrick Berrebi

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