scholarly journals Time-variant species pools shape competitive dynamics and diversity-ecosystem function relationships in pitcher plant bacterial communities

2016 ◽  
Author(s):  
Dave W Armitage
Keyword(s):  
Ecosystem Function ◽  
Temporal Dynamics ◽  
Common Garden ◽  
Bacterial Strains ◽  
Pitcher Plant ◽  
Respiration Rates ◽  
Species Pools ◽  
Local Species ◽  
Successional Species

Biodiversity-ecosystem function (BEF) experiments often employ common garden designs, drawing samples from a local biota. However, the communities from which taxa are sampled may not be at equilibrium. I assembled pools of aquatic bacterial strains isolated at different time points from leaves on the pitcher plant Darlingtonia californica to evaluate the role of a dynamic, host-associated microbiota on the BEF relationship. I constructed experimental communities using bacteria from each time point and measured their respiration rates. Communities assembled from mid-successional species pools showed the strongest positive relationships between community richness and respiration rates, driven primarily by linear additivity among isolates. Diffuse competition was common among all communities but greatest within mid-successional isolates. These results demonstrate the dependence of the BEF relationship on the temporal dynamics of the local species pool, implying that ecosystems may respond differently to the addition or removal of taxa at different points in time during succession.

scholarly journals Time-variant species pools shape competitive dynamics and diversity-ecosystem function relationships

2016 ◽  
Author(s):  
Dave W Armitage
Keyword(s):  
Ecosystem Function ◽  
Temporal Dynamics ◽  
Common Garden ◽  
Competitive Dynamics ◽  
Bacterial Strains ◽  
Pitcher Plant ◽  
Respiration Rates ◽  
Species Pools ◽  
Local Species ◽  
Successional Species

Biodiversity-ecosystem function (BEF) experiments routinely employ common garden designs, drawing samples from a local biota. The communities from which taxa are sampled may not, however, be at equilibrium. To test for temporal changes in BEF relationships, I assembled pools of aquatic bacterial strains isolated at different time points from leaves on the pitcher plant Darlingtonia californica in order to evaluate the strength, direction, and drivers of the BEF relationship across a natural host-associated successional gradient. I constructed experimental communities using bacterial isolates from each time point and measured their respiration rates and competitive interactions. Communities assembled from mid-successional species pools showed the strongest positive relationships between community richness and respiration rates, driven primarily by linear additivity among isolates. Diffuse competition was common among all communities but greatest within mid-successional isolates. These results demonstrate the dependence of the BEF relationship on the temporal dynamics of the local species pool, implying that ecosystems may respond differently to the addition or removal of taxa at different points in time during succession.

scholarly journals Time-variant species pools shape competitive dynamics and diversity-ecosystem function relationships

2016 ◽  
Author(s):  
Dave W Armitage
Keyword(s):  
Ecosystem Function ◽  
Temporal Dynamics ◽  
Common Garden ◽  
Competitive Dynamics ◽  
Bacterial Strains ◽  
Pitcher Plant ◽  
Respiration Rates ◽  
Species Pools ◽  
Local Species ◽  
Successional Species

Biodiversity-ecosystem function (BEF) experiments routinely employ common garden designs, drawing samples from a local biota. The communities from which taxa are sampled may not, however, be at equilibrium. To test for temporal changes in BEF relationships, I assembled pools of aquatic bacterial strains isolated at different time points from leaves on the pitcher plant Darlingtonia californica in order to evaluate the strength, direction, and drivers of the BEF relationship across a natural host-associated successional gradient. I constructed experimental communities using bacterial isolates from each time point and measured their respiration rates and competitive interactions. Communities assembled from mid-successional species pools showed the strongest positive relationships between community richness and respiration rates, driven primarily by linear additivity among isolates. Diffuse competition was common among all communities but greatest within mid-successional isolates. These results demonstrate the dependence of the BEF relationship on the temporal dynamics of the local species pool, implying that ecosystems may respond differently to the addition or removal of taxa at different points in time during succession.

scholarly journals Time-variant species pools shape competitive dynamics and biodiversity–ecosystem function relationships

2016 ◽  
Vol 283 (1838) ◽  
pp. 20161437 ◽  
Author(s):  
David W. Armitage
Keyword(s):  
Ecosystem Function ◽  
Temporal Dynamics ◽  
Common Garden ◽  
Competitive Dynamics ◽  
Bacterial Strains ◽  
Pitcher Plant ◽  
Respiration Rates ◽  
Species Pools ◽  
Local Species ◽  
Successional Species

Biodiversity–ecosystem function (BEF) experiments routinely employ common garden designs, drawing samples from a local biota. The communities from which taxa are sampled may not, however, be at equilibrium. To test for temporal changes in BEF relationships, I assembled the pools of aquatic bacterial strains isolated at different time points from leaves on the pitcher plant Darlingtonia californica in order to evaluate the strength, direction and drivers of the BEF relationship across a natural host-associated successional gradient. I constructed experimental communities using bacterial isolates from each time point and measured their respiration rates and competitive interactions. Communities assembled from mid-successional species pools showed the strongest positive relationships between community richness and respiration rates, driven primarily by linear additivity among isolates. Diffuse competition was common among all communities but greatest within mid-successional isolates. These results demonstrate the dependence of the BEF relationship on the temporal dynamics of the local species pool, implying that ecosystems may respond differently to the addition or removal of taxa at different points in time during succession.

10 THE ROLE OF DIETARY L-SERINE IN THE REGULATION OF INTESTINAL MUCUS BARRIER DURING INFLAMMATION

2020 ◽  
Vol 26 (Supplement_1) ◽  
pp. S42-S42
Author(s):  
Kohei Sugihara ◽  
Nobuhiko Kamada
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Gut Microbiota ◽  
Control Diet ◽  
Bacterial Strains ◽  
Germ Free ◽  
Intestinal Mucus ◽  
Gnotobiotic Mice ◽  
Mucus Barrier

Abstract Background Recent accumulating evidence suggests that amino acids have crucial roles in the maintenance of intestinal homeostasis. In inflammatory bowel disease (IBD), amino acid metabolism is changed in both host and the gut microbiota. Among amino acids, L-serine plays a central role in several metabolic processes that are essential for the growth and survival of both mammalian and bacterial cells. However, the role of L-serine in intestinal homeostasis and IBD remains incompletely understood. In this study, we investigated the effect of dietary L-serine on intestinal inflammation in a murine model of colitis. Methods Specific pathogen-free (SPF) mice were fed either a control diet (amino acid-based diet) or an L-serine-deficient diet (SDD). Colitis was induced by the treatment of dextran sodium sulfate (DSS). The gut microbiome was analyzed by 16S rRNA sequencing. We also evaluate the effect of dietary L-serine in germ-free mice and gnotobiotic mice that were colonized by a consortium of non-mucolytic bacterial strains or the consortium plus mucolytic bacterial strains. Results We found that the SDD exacerbated experimental colitis in SPF mice. However, the severity of colitis in SDD-fed mice was comparable to control diet-fed mice in germ-free condition, suggesting that the gut microbiota is required for exacerbation of colitis caused by the restriction of dietary L-serine. The gut microbiome analysis revealed that dietary L-serine restriction fosters the blooms of a mucus-degrading bacterium Akkermansia muciniphila and adherent-invasive Escherichia coli in the inflamed gut. Consistent with the expansion of mucolytic bacteria, SDD-fed mice showed a loss of the intestinal mucus layer. Dysfunction of the mucus barrier resulted in increased intestinal permeability, thereby leading to bacterial translocation to the intestinal mucosa, which subsequently increased the severity of colitis. The increased intestinal permeability and subsequent bacterial translocation were observed in SDD-fed gnotobiotic mice that colonized by mucolytic bacteria. In contrast, dietary L-serine restriction did not alter intestinal barrier integrity in gnotobiotic mice that colonized only by non-mucolytic bacteria. Conclusion Our results suggest that dietary L-serine regulates the integrity of the intestinal mucus barrier during inflammation by limiting the expansion of mucus degrading bacteria.

scholarly journals Corticostriatal control of defense behavior in mice induced by auditory looming cues

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Zhong Li ◽  
Jin-Xing Wei ◽  
Guang-Wei Zhang ◽  
Junxiang J. Huang ◽  
Brian Zingg ◽  
...  
Keyword(s):  
Essential Role ◽  
Neural Circuits ◽  
Temporal Dynamics ◽  
Defense Behavior ◽  
Innate Defense ◽  
Sensory Inputs ◽  
Corticostriatal Projections ◽  
Behavioral Transition ◽  
Auditory Looming

AbstractAnimals exhibit innate defense behaviors in response to approaching threats cued by the dynamics of sensory inputs of various modalities. The underlying neural circuits have been mostly studied in the visual system, but remain unclear for other modalities. Here, by utilizing sounds with increasing (vs. decreasing) loudness to mimic looming (vs. receding) objects, we find that looming sounds elicit stereotypical sequential defensive reactions: freezing followed by flight. Both behaviors require the activity of auditory cortex, in particular the sustained type of responses, but are differentially mediated by corticostriatal projections primarily innervating D2 neurons in the tail of the striatum and corticocollicular projections to the superior colliculus, respectively. The behavioral transition from freezing to flight can be attributed to the differential temporal dynamics of the striatal and collicular neurons in their responses to looming sound stimuli. Our results reveal an essential role of the striatum in the innate defense control.

scholarly journals Arthropod community structure in pastures of an island archipelago (Azores): looking for local–regional species richness patterns at fine-scales

2004 ◽  
Vol 94 (2) ◽  
pp. 111-121 ◽  
Author(s):  
P.A.V. Borges ◽  
V.K. Brown
Keyword(s):  
Species Richness ◽  
Regional Scale ◽  
Local Scale ◽  
Local Species Richness ◽  
Β Diversity ◽  
Arthropod Species ◽  
Α Diversity ◽  
Local Species ◽  
Richness Patterns

AbstractThe arthropod species richness of pastures in three Azorean islands was used to examine the relationship between local and regional species richness over two years. Two groups of arthropods, spiders and sucking insects, representing two functionally different but common groups of pasture invertebrates were investigated. The local–regional species richness relationship was assessed over relatively fine scales: quadrats (= local scale) and within pastures (= regional scale). Mean plot species richness was used as a measure of local species richness (= α diversity) and regional species richness was estimated at the pasture level (= γ diversity) with the ‘first-order-Jackknife’ estimator. Three related issues were addressed: (i) the role of estimated regional species richness and variables operating at the local scale (vegetation structure and diversity) in determining local species richness; (ii) quantification of the relative contributions of α and β diversity to regional diversity using additive partitioning; and (iii) the occurrence of consistent patterns in different years by analysing independently between-year data. Species assemblages of spiders were saturated at the local scale (similar local species richness and increasing β-diversity in richer regions) and were more dependent on vegetational structure than regional species richness. Sucking insect herbivores, by contrast, exhibited a linear relationship between local and regional species richness, consistent with the proportional sampling model. The patterns were consistent between years. These results imply that for spiders local processes are important, with assemblages in a particular patch being constrained by habitat structure. In contrast, for sucking insects, local processes may be insignificant in structuring communities.

The role of short-term weather conditions in temporal dynamics of fire regime features in mainland Spain

2019 ◽  
Vol 241 ◽  
pp. 575-586 ◽  
Author(s):  
Adrián Jiménez-Ruano ◽  
Marcos Rodrigues Mimbrero ◽  
W. Matt Jolly ◽  
Juan de la Riva Fernández
Keyword(s):  
Temporal Dynamics ◽  
Fire Regime ◽  
Weather Conditions ◽  
Short Term

THE ROLE OF PLANS IN THE FORMATION OF A NEW INNOVATION PRACTICE: AN INNOVATION OBJECT PERSPECTIVE

2019 ◽  
Vol 23 (04) ◽  
pp. 1950031
Author(s):  
SIW M. FOSSTENLØKKEN
Keyword(s):  
Significant Role ◽  
Current Practice ◽  
Temporal Dynamics ◽  
Ethnographic Study ◽  
Innovation Theory ◽  
Object Theory ◽  
Primary Object ◽  
Practice Development ◽  
Future Practice

This paper explores the role of plans, as objects, in the formation of new innovation practice in organisations. A vocabulary for analysis is developed from innovation object theory. First, findings from an ethnographic study in a hospital organisation show that a plan serves several functions depending on its activation for use: a checklist of past practice (tertiary object), an opener for debates over current practice (secondary object) and a trigger for future practice development (primary object). Second, a framework is offered that shows how a plan supports different functionalities (evaluating, debating, further exploring) in a temporal dynamics of practice formation. Third, thus, plans play a significant role not only in planning activities, but also as connectors that shape and patch together pieces of past, present and future into what actually become new organisational practice. Finally, implications for innovation theory and management are drawn from these novel contributions.

The role of waterlogging and sand accretion in modulating the morphology of the dune slack plant Scirpus americanus

1990 ◽  
Vol 68 (8) ◽  
pp. 1780-1787 ◽  
Author(s):  
Denise M. Seliskar
Keyword(s):  
Sand Dune ◽  
Plant Morphology ◽  
Common Garden ◽  
Stem Growth ◽  
Reciprocal Transplant ◽  
Dune Slack ◽  
Coastal Sand Dune ◽  
Scirpus Americanus ◽  
Common Garden Experiments

Scirpus americanus Pers., a major dune slack plant in coastal sand dune ecosystems, differs in height along transects ranging between the lowest and highest elevational areas of slacks located along the coast of Delaware, U.S.A. Using reciprocal transplant and common garden experiments, results suggest that environmental factors rather than hereditary traits are more important in accounting for the differences in plant morphology expressed in the field. Dune slack plants are exposed to stresses of waterlogging and sand accretion in their natural environment. In controlled greenhouse experiments waterlogging was shown to inhibit stem growth and cause an increase in aerenchymatous tissue, whereas periodic sand deposition caused an increase in the plant height of Scirpus.

scholarly journals Pyrrolnitrin Biosynthesis From Rhizospheric Serratia Spp. With Antifungal Activity and Binding Interactions of PrnF With Ligands

2020 ◽  
Author(s):  
Shraddha P. Pawar ◽  
Ambalal B. Chaudhari
Keyword(s):  
Antifungal Activity ◽  
Phytopathogenic Fungi ◽  
Bacterial Strains ◽  
Rrna Sequence ◽  
16S Rrna Sequence ◽  
Protein Model ◽  
Stenotrophomonas Rhizophila ◽  
K 12 ◽  
Layer Chromatography

Abstract Pyrrolnitrin (PRN) from rhizobacteria displays a key role in biocontrol of phytopathogenic fungi in rhizospheric soil. Therefore, different rhizospheric soils were investigated for the prevalence of PRN producer in minimal salt (MS) medium containing tryptophan (0.2 M NaCl; pH 8) using three successive enrichments. Of 12% isolates, only five bacterial strains had shown PRN secretion, screened with Thin Layer Chromatography (Rf 0.8) and antifungal activity (27 mm) against phytopathogen. The phenetic and 16S rRNA sequence revealed the close affiliation of isolates (KMB, M-2, M-11, TW3, and TO2) to Stenotrophomonas rhizophila (KY800458), Enterobacter spp. (KY800455), Brevibacillus parabrevis (KY800454), Serratia marcescens (KY800456) and Serratia nemtodiphila (KY800457). Purified compound from isolates was characterised using UV, IR, HPLC, LCMS and GCMS as PRN. However, BLASTn hit of prn gene sequences from both Serratia species showed 99% similarity with NADPH dependent FMN reductase component (prnF). The homology protein model of prnF was developed from translated sequence of S. marcescens TW3 with chromate reductase of Escherichia coli K-12. Docking with FMN and NADPH was performed. The study demonstrated the possible role of prnF NADPH dependent FMN reductases in prnD for supply of reduced flavin in rhizobacterial strain of Serratia spp. which may pave a way to understand PRN production.

Sign in / Sign up

Export Citation Format

Share Document