scholarly journals Impact of urbanization on functional diversity in macromycete communities along an urban ecosystem in Southwest Mexico

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12191
Author(s):  
Marko Gómez-Hernández ◽  
Emily Avendaño-Villegas ◽  
María Toledo-Garibaldi ◽  
Etelvina Gándara
Keyword(s):  
Species Richness ◽  
Functional Diversity ◽  
Ecosystem Functioning ◽  
Urban Ecosystem ◽  
Niche Space ◽  
Urbanization Gradient ◽  
Urbanization Level ◽  
Functional Value ◽  
Functional Richness ◽  
Available Resources

Macromycetes are a group of fungi characterized by the production of fruit bodies and are highly relevant in most terrestrial ecosystems as pathogens, mutualists, and organic matter decomposers. Habitat transformation can drastically alter macromycete communities and diminish the contribution of these organisms to ecosystem functioning; however, knowledge on the effect of urbanization on macrofungal communities is scarce. Diversity metrics based on functional traits of macromycete species have shown to be valuable tools to predict how species contribute to ecosystem functionality since traits determine the performance of species in ecosystems. The aim of this study was to assess patterns of species richness, functional diversity, and composition of macrofungi in an urban ecosystem in Southwest Mexico, and to identify microclimatic, environmental, and urban factors related to these patterns in order to infer the effect of urbanization on macromycete communities. We selected four oak forests along an urbanization gradient and established a permanent sampling area of 0.1 ha at each site. Macromycete sampling was carried out every week from June to October 2017. The indices used to measure functional diversity were functional richness (FRic), functional divergence (FDig), and functional evenness (FEve). The metric used to assess variation of macrofungal ecological function along the study area was the functional value. We recorded a total of 134 macromycete species and 223 individuals. Our results indicated a decline of species richness with increased urbanization level related mainly to microclimatic variables, and a high turnover of species composition among study sites, which appears to be related to microclimatic and urbanization variables. FRic decreased with urbanization level, indicating that some of the available resources in the niche space within the most urbanized sites are not being utilized. FDig increased with urbanization, which suggests a high degree of niche differentiation among macromycete species within communities in urbanized areas. FEve did not show notable differences along the urbanization gradient, indicating few variations in the distribution of abundances within the occupied sections of the niche space. Similarly, the functional value was markedly higher in the less urbanized site, suggesting greater performance of functional guilds in that area. Our findings suggest that urbanization has led to a loss of macromycete species and a decrease in functional diversity, causing some sections of the niche space to be hardly occupied and available resources to be under-utilized, which could, to a certain extent, affect ecosystem functioning and stability.

scholarly journals The Effect of Climate and Human Pressures on Functional Diversity and Species Richness Patterns of Amphibians, Reptiles and Mammals in Europe

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 275
Author(s):  
Mariana A. Tsianou ◽  
Maria Lazarina ◽  
Danai-Eleni Michailidou ◽  
Aristi Andrikou-Charitidou ◽  
Stefanos P. Sgardelis ◽  
...  
Keyword(s):  
Species Richness ◽  
Functional Diversity ◽  
Agricultural Land ◽  
Influential Factor ◽  
Climatic Variables ◽  
Quadratic Entropy ◽  
Functional Richness ◽  
Precipitation Seasonality ◽  
Rao’S Quadratic Entropy ◽  
Richness Patterns

The ongoing biodiversity crisis reinforces the urgent need to unravel diversity patterns and the underlying processes shaping them. Although taxonomic diversity has been extensively studied and is considered the common currency, simultaneously conserving other facets of diversity (e.g., functional diversity) is critical to ensure ecosystem functioning and the provision of ecosystem services. Here, we explored the effect of key climatic factors (temperature, precipitation, temperature seasonality, and precipitation seasonality) and factors reflecting human pressures (agricultural land, urban land, land-cover diversity, and human population density) on the functional diversity (functional richness and Rao’s quadratic entropy) and species richness of amphibians (68 species), reptiles (107 species), and mammals (176 species) in Europe. We explored the relationship between different predictors and diversity metrics using generalized additive mixed model analysis, to capture non-linear relationships and to account for spatial autocorrelation. We found that at this broad continental spatial scale, climatic variables exerted a significant effect on the functional diversity and species richness of all taxa. On the other hand, variables reflecting human pressures contributed significantly in the models even though their explanatory power was lower compared to climatic variables. In most cases, functional richness and Rao’s quadratic entropy responded similarly to climate and human pressures. In conclusion, climate is the most influential factor in shaping both the functional diversity and species richness patterns of amphibians, reptiles, and mammals in Europe. However, incorporating factors reflecting human pressures complementary to climate could be conducive to us understanding the drivers of functional diversity and richness patterns.

scholarly journals Multitrophic functional diversity predicts ecosystem functioning in experimental assemblages of estuarine consumers

2015 ◽  
Author(s):  
Jonathan S Lefcheck ◽  
J. Emmett Duffy
Keyword(s):  
Species Richness ◽  
Food Web ◽  
Functional Diversity ◽  
Ecosystem Functioning ◽  
Structural Equation ◽  
A Priori ◽  
Functional Trait ◽  
Trophic Levels ◽  
Equation Modeling ◽  
Experimental Investigations

The use of functional traits to explain how biodiversity affects ecosystem functioning has attracted intense interest, yet few studies have a priori altered functional diversity, especially in multitrophic communities. Here, we manipulated multivariate functional diversity of estuarine grazers and predators within multiple levels of species richness to test how species richness and functional diversity predicted ecosystem functioning in a multitrophic food web. Community functional diversity was a better predictor than species richness for the majority of ecosystem properties, based on general linear mixed effects models. Combining inferences from 8 traits into a single multivariate index increased prediction accuracy of these models relative to any individual trait. Structural equation modeling revealed that functional diversity of both grazers and predators was important in driving final biomass within trophic levels, with stronger effects observed for predators. We also show that different species drove different ecosystem responses, with evidence for both sampling effects and complementarity. Our study extends experimental investigations of functional trait diversity to a multilevel food web, and demonstrates that functional diversity can be more accurate and effective than species richness in predicting community biomass in a food web context.

scholarly journals Multitrophic functional diversity predicts ecosystem functioning in experimental assemblages of estuarine consumers

2015 ◽  
Author(s):  
Jonathan S Lefcheck ◽  
J. Emmett Duffy
Keyword(s):  
Species Richness ◽  
Food Web ◽  
Functional Diversity ◽  
Ecosystem Functioning ◽  
Structural Equation ◽  
A Priori ◽  
Functional Trait ◽  
Trophic Levels ◽  
Equation Modeling ◽  
Experimental Investigations

The use of functional traits to explain how biodiversity affects ecosystem functioning has attracted intense interest, yet few studies have a priori manipulated functional diversity, especially in multitrophic communities. Here, we manipulated multivariate functional diversity of estuarine grazers and predators within two levels of species richness to test how species richness and functional diversity predicted ecosystem functioning in a multitrophic food web. Community functional diversity was a better predictor than species richness for the majority of ecosystem properties, based on general linear mixed effects models. Combining inferences from 8 traits into a single multivariate index increased prediction accuracy of these properties relative to any individual trait. Structural equation modeling revealed that functional diversity of both grazers and predators was important in driving final biomass within and between trophic levels, with stronger effects observed for predators. We also show that different species drove different ecosystem responses, with evidence for both sampling effects and complementarity. Our study extends experimental investigations of functional trait diversity to a multilevel food web, and demonstrates that functional diversity can be more accurate and effective than species richness in predicting community biomass in a food web context.

scholarly journals Functional diversity of marine megafauna in the Anthropocene

2020 ◽  
Vol 6 (16) ◽  
pp. eaay7650 ◽  
Author(s):  
C. Pimiento ◽  
F. Leprieur ◽  
D. Silvestro ◽  
J. S. Lefcheck ◽  
C. Albouy ◽  
...  
Keyword(s):  
At Risk ◽  
Functional Diversity ◽  
Threatened Species ◽  
Ecosystem Functioning ◽  
Ecosystem Functions ◽  
Functional Richness ◽  
Risk Of Extinction ◽  
If Current ◽  
Marine Megafauna

Marine megafauna, the largest animals in the oceans, serve key roles in ecosystem functioning. Yet, one-third of these animals are at risk of extinction. To better understand the potential consequences of megafaunal loss, here we quantify their current functional diversity, predict future changes under different extinction scenarios, and introduce a new metric [functionally unique, specialized and endangered (FUSE)] that identifies threatened species of particular importance for functional diversity. Simulated extinction scenarios forecast marked declines in functional richness if current trajectories are maintained during the next century (11% globally; up to 24% regionally), with more marked reductions (48% globally; up to 70% at the poles) beyond random expectations if all threatened species eventually go extinct. Among the megafaunal groups, sharks will incur a disproportionate loss of functional richness. We identify top FUSE species and suggest a renewed focus on these species to preserve the ecosystem functions provided by marine megafauna.

scholarly journals Multitrophic functional diversity predicts ecosystem functioning in experimental assemblages of estuarine consumers

2014 ◽  
Author(s):  
Jonathan S Lefcheck ◽  
J. Emmett Duffy
Keyword(s):  
Species Richness ◽  
Food Web ◽  
Functional Diversity ◽  
Functional Traits ◽  
Ecosystem Functioning ◽  
Structural Equation ◽  
Trophic Levels ◽  
Ecosystem Functions ◽  
Equation Modeling ◽  
Experimental Investigations

The use of functional traits to explain biodiversity effects on ecosystem functioning has attracted intense recent interest, yet very few a priori manipulations of functional diversity have been attempted to date, especially from a food web perspective. Here, we simultaneously manipulated multiple functional traits of estuarine grazers and predators within multiple levels of species richness to test whether species richness or functional diversity is a better predictor of ecosystem functioning in multitrophic estuarine food webs. Community functional diversity better predicted the majority of ecosystem responses based on results from generalized linear mixed effects models. Structural equation modeling revealed that this outcome was independently attributable to functional diversity of both trophic levels, with stronger effects observed for predators. Functional complementarity was also important, as species with different combinations of traits influenced different ecosystem functions. Our study is the first to extend experimental investigations of functional diversity to a multilevel food web, and demonstrates that functional diversity is more effective than species richness in predicting ecosystem functioning in a food web context.

scholarly journals Functional, size and taxonomic diversity of fish along a depth gradient in the deep sea

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2387 ◽  
Author(s):  
Beth L. Mindel ◽  
Francis C. Neat ◽  
Clive N. Trueman ◽  
Thomas J. Webb ◽  
Julia L. Blanchard
Keyword(s):  
Species Richness ◽  
Continental Slope ◽  
Functional Diversity ◽  
Deep Sea ◽  
Morphological Traits ◽  
Fish Assemblages ◽  
Functional Divergence ◽  
Feeding Guilds ◽  
Functional Richness ◽  
Size Diversity

Biodiversity is well studied in ecology and the concept has been developed to include traits of species, rather than solely taxonomy, to better reflect the functional diversity of a system. The deep sea provides a natural environmental gradient within which to study changes in different diversity metrics, but traits of deep-sea fish are not widely known, hampering the application of functional diversity to this globally important system. We used morphological traits to determine the functional richness and functional divergence of demersal fish assemblages along the continental slope in the Northeast Atlantic, at depths of 300–2,000 m. We compared these metrics to size diversity based on individual body size and species richness. Functional richness and size diversity showed similar patterns, with the highest diversity at intermediate depths; functional divergence showed the opposite pattern, with the highest values at the shallowest and deepest parts of the study site. Species richness increased with depth. The functional implications of these patterns were deduced by examining depth-related changes in morphological traits and the dominance of feeding guilds as illustrated by stable isotope analyses. The patterns in diversity and the variation in certain morphological traits can potentially be explained by changes in the relative dominance of pelagic and benthic feeding guilds. All measures of diversity examined here suggest that the deep areas of the continental slope may be equally or more diverse than assemblages just beyond the continental shelf.

scholarly journals Multitrophic functional diversity predicts ecosystem functioning in experimental assemblages of estuarine consumers

2015 ◽  
Author(s):  
Jonathan S Lefcheck ◽  
J. Emmett Duffy
Keyword(s):  
Species Richness ◽  
Food Web ◽  
Functional Diversity ◽  
Ecosystem Functioning ◽  
Structural Equation ◽  
A Priori ◽  
Functional Trait ◽  
Trophic Levels ◽  
Equation Modeling ◽  
Experimental Investigations

The use of functional traits to explain how biodiversity affects ecosystem functioning has attracted intense interest, yet few studies have a priori altered functional diversity, especially in multitrophic communities. Here, we manipulated multivariate functional diversity of estuarine grazers and predators within multiple levels of species richness to test how species richness and functional diversity predicted ecosystem functioning in a multitrophic food web. Community functional diversity was a better predictor than species richness for the majority of ecosystem properties, based on general linear mixed effects models. Combining inferences from 8 traits into a single multivariate index increased prediction accuracy of these models relative to any individual trait. Structural equation modeling revealed that functional diversity of both grazers and predators was important in driving final biomass within trophic levels, with stronger effects observed for predators. We also show that different species drove different ecosystem responses, with evidence for both sampling effects and complementarity. Our study extends experimental investigations of functional trait diversity to a multilevel food web, and demonstrates that functional diversity can be more accurate and effective than species richness in predicting community biomass in a food web context.

scholarly journals Common latitudinal gradients in functional richness and functional evenness across marine and terrestrial systems

2019 ◽  
Vol 286 (1908) ◽  
pp. 20190745 ◽  
Author(s):  
M. Schumm ◽  
S. M. Edie ◽  
K. S. Collins ◽  
V. Gómez-Bahamón ◽  
K. Supriya ◽  
...  
Keyword(s):  
Species Richness ◽  
Functional Groups ◽  
Functional Diversity ◽  
Skewed Distribution ◽  
Model Systems ◽  
Latitudinal Gradients ◽  
Ecological Specialization ◽  
Functional Richness ◽  
The Tropics ◽  
Functional Evenness

Functional diversity is an important aspect of biodiversity, but its relationship to species diversity in time and space is poorly understood. Here we compare spatial patterns of functional and taxonomic diversity across marine and terrestrial systems to identify commonalities in their respective ecological and evolutionary drivers. We placed species-level ecological traits into comparable multi-dimensional frameworks for two model systems, marine bivalves and terrestrial birds, and used global species-occurrence data to examine the distribution of functional diversity with latitude and longitude. In both systems, tropical faunas show high total functional richness (FR) but low functional evenness (FE) (i.e. the tropics contain a highly skewed distribution of species among functional groups). Functional groups that persist toward the poles become more uniform in species richness, such that FR declines and FE rises with latitude in both systems. Temperate assemblages are more functionally even than tropical assemblages subsampled to temperate levels of species richness, suggesting that high species richness in the tropics reflects a high degree of ecological specialization within a few functional groups and/or factors that favour high recent speciation or reduced extinction rates in those groups.

scholarly journals Social-ecological filters drive the functional diversity of beetles in homegardens of campesinos and migrants in the southern Andes

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
José Tomás Ibarra ◽  
Julián Caviedes ◽  
Tomás A. Altamirano ◽  
Romina Urra ◽  
Antonia Barreau ◽  
...  
Keyword(s):  
Species Richness ◽  
Functional Diversity ◽  
Functional Traits ◽  
Management Practices ◽  
Structural Complexity ◽  
Beetle Species ◽  
Social Ecological ◽  
Functional Richness ◽  
Relationship Of ◽  
Ecological Filters

AbstractHomegardens are coupled social-ecological systems that act as biodiversity reservoirs while contributing to local food sovereignty. These systems are characterized by their structural complexity, while involving management practices according to gardener’s cultural origin. Social–ecological processes in homegardens may act as filters of species’ functional traits, and thus influence the species richness-functional diversity relationship of critical agroecosystem components like beetles (Coleoptera). We tested the species richness-functional diversity relationship of beetle communities and examined whether habitat structure across different levels, sociodemographic profiles, and management practices act as filters in homegardens in a Global Biodiversity Hotspot, Chile. For 100 homegardens (50 campesino and 50 migrant), we sampled beetles and habitat attributes, and surveyed gardeners’ sociodemographic profiles and management practices. We recorded 85 beetle species and found a positive relationship between species richness and functional richness that saturated when functionally similar species co-occur more often than expected by chance, indicating functional redundancy in species-rich homegardens. Gardener origin (campesino/migrant), homegarden area (m2), structural complexity (index), and pest control strategy (natural, chemical, or none) were the most influential social–ecological filters that selectively remove beetle species according to their functional traits. We discuss opportunities in homegarden management for strengthening local functional diversity and resilience under social-environmental changes.

scholarly journals The total fungal microbiome functionality

2019 ◽  
Author(s):  
Robert Starke ◽  
Petr Capek ◽  
Daniel Morais ◽  
Nico Jehmlich ◽  
Petr Baldrian
Keyword(s):  
Species Richness ◽  
Ecosystem Functioning ◽  
Meta Analysis ◽  
Taxonomic Diversity ◽  
Fungal Species ◽  
Saturated Model ◽  
P Value ◽  
Functional Richness ◽  
Fungal Microbiome ◽  
Non Parametric

Unveiling the relationship between taxonomy and function of the microbiome is crucial to determine its contribution to ecosystem functioning. However, while there is a considerable amount of information on microbial taxonomic diversity, our understanding of its relationship to functional diversity is still scarce. Here we used a meta-analysis of 377 completely annotated and taxonomically different fungal genomes to predict the total fungal microbiome functionality on Earth with all known functions from level 3 of KEGG Orthology using both parametric and non-parametric estimations. The unsaturated model described the accumulation of functions with increasing species richness significantly better (P-value < 2.2e−16) than the saturated model suggesting the presence of widespread and rare functions. Consistent with the parametric approach, the non-parametric Chao-1 estimator that assumes a maximum functional richness did not reach a plateau. Based on previous estimates of fungal species richness on Earth, we propagated the unsaturated model to predict a total fungal microbiome functionality of 42.4 million. Of those, only 0.06% are known today since the vast majority belongs to yet unknown rare functions. Logically, our approach not only highlighted the presence of two types of functions but pointed towards the necessity of novel and more sophisticated methods to unveil the entirety of functions to fully understand the involvement of the fungal microbiome in ecosystem functioning.

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