scholarly journals DNA barcoding and morphological identification of spiny lobsters in South Korean waters: a new record of Panulirus longipes and Panulirus homarus homarus

PeerJ ◽  
2022 ◽  
Vol 10 ◽  
pp. e12744
Author(s):  
Sachithra Amarin Hettiarachchi ◽  
Ji-Yeon Hyeon ◽  
Angka Mahardini ◽  
Hyung-Suk Kim ◽  
Jun-Hwan Byun ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Phylogenetic Profile ◽  
Spiny Lobster ◽  
Morphological Identification ◽  
Abdominal Somite ◽  
Morphological Variations ◽  
Korean Waters ◽  
South Korean ◽  
Spiny Lobsters ◽  
First Time

To date, 19 species of spiny lobsters from the genus Panulirus have been discovered, of which only P. japonicus, P. penicilatus, P. stimpsoni, and P. versicolor have been documented in South Korean waters. In this study, we aimed to identify and update the current list of spiny lobster species that inhabit South Korean waters based on the morphological features and the phylogenetic profile of cytochrome oxidase I (COI) of mitochondrial DNA (mtDNA). Spiny lobsters were collected from the southern and eastern coasts of Jeju Island, South Korea. Phylogenetic analyses were performed using neighbor-joining (NJ), maximum likelihood (ML), and Bayesian inference (BI) methods. The ML tree was used to determine the spiny lobster lineages, thereby clustering the 17 specimens collected in this study into clades A, B, C, and D, which were reciprocally monophyletic with P. japonicus, P. homarus homarus, P. longipes, and P. stimpsoni, respectively. These clades were also supported by morphological examinations. Interestingly, morphological variations, including the connected pleural and transverse groove at the third abdominal somite, were observed in four specimens that were genetically confirmed as P. japonicus. This finding is novel within the P. japonicus taxonomical reports. Additionally, this study updates the documentation of spiny lobsters inhabiting South Korean waters as P. longipes and P. homarus homarus were recorded for the first time in this region.

scholarly journals Larval stages of Areopaguristes japonicus (Miyake, 1961) (Decapoda: Anomura: Diogenidae) described from laboratory reared material

Zootaxa ◽  
2012 ◽  
Vol 3368 (1) ◽  
pp. 146 ◽  
Author(s):  
SEOK HYUN LEE ◽  
HYUN SOOK KO
Keyword(s):  
Ovigerous Female ◽  
Northwestern Pacific ◽  
Korean Waters ◽  
Larval Stages ◽  
South Korean ◽  
First Time

Areopaguristes japonicus (Miyake, 1961) is recorded from South Korean waters for the first time with the collection of an ovigerous female. The zoeal and megalopal stages of this species are described from laboratory reared material and compared to larvae of eight other described Diogenidae species from the northwestern Pacific. The larvae of A. japonicas are distinguished from those of other diogenids by mediodorsal spines on zoeal pleomeres 3 and 4 and having a spine on the mediodorsal margin of the megalopal pleomere 2. A provisional key for identifying diogenid zoeas from the northwestern Pacific is provided.

scholarly journals Towards a Natural Classification of Hyphodontia Sensu Lato and the Trait Evolution of Basidiocarps within Hymenochaetales (Basidiomycota)

2021 ◽  
Vol 7 (6) ◽  
pp. 478
Author(s):  
Xue-Wei Wang ◽  
Tom W. May ◽  
Shi-Liang Liu ◽  
Li-Wei Zhou
Keyword(s):  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Ancestral State ◽  
Trait Evolution ◽  
Natural Classification ◽  
Multiple Loci ◽  
The Family ◽  
Phylogenetic Perspective ◽  
Taxonomic Framework ◽  
First Time

Hyphodontia sensu lato, belonging to Hymenochaetales, accommodates corticioid wood-inhabiting basidiomycetous fungi with resupinate basidiocarps and diverse hymenophoral characters. Species diversity of Hyphodontia sensu lato has been extensively explored worldwide, but in previous studies the six accepted genera in Hyphodontia sensu lato, viz. Fasciodontia, Hastodontia, Hyphodontia, Kneiffiella, Lyomyces and Xylodon were not all strongly supported from a phylogenetic perspective. Moreover, the relationships among these six genera in Hyphodontia sensu lato and other lineages within Hymenochaetales are not clear. In this study, we performed comprehensive phylogenetic analyses on the basis of multiple loci. For the first time, the independence of each of the six genera receives strong phylogenetic support. The six genera are separated in four clades within Hymenochaetales: Fasciodontia, Lyomyces and Xylodon are accepted as members of a previously known family Schizoporaceae, Kneiffiella and Hyphodontia are, respectively, placed in two monotypic families, viz. a previous name Chaetoporellaceae and a newly introduced name Hyphodontiaceae, and Hastodontia is considered to be a genus with an uncertain taxonomic position at the family rank within Hymenochaetales. The three families emerged between 61.51 and 195.87 million years ago. Compared to other families in the Hymenochaetales, these ages are more or less similar to those of Coltriciaceae, Hymenochaetaceae and Oxyporaceae, but much older than those of the two families Neoantrodiellaceae and Nigrofomitaceae. In regard to species, two, one, three and 10 species are newly described from Hyphodontia, Kneiffiella, Lyomyces and Xylodon, respectively. The taxonomic status of additional 30 species names from these four genera is briefly discussed; an epitype is designated for X. australis. The resupinate habit and poroid hymenophoral configuration were evaluated as the ancestral state of basidiocarps within Hymenochaetales. The resupinate habit mainly remains, while the hymenophoral configuration mainly evolves to the grandinioid-odontioid state and also back to the poroid state at the family level. Generally, a taxonomic framework for Hymenochaetales with an emphasis on members belonging to Hyphodontia sensu lato is constructed, and trait evolution of basidiocarps within Hymenochaetales is revealed accordingly.

scholarly journals Molecular analysis of the mitochondrial markers COI, 12S rDNA and 16S rDNA for six species of Iranian scorpions

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Parisa Soltan-Alinejad ◽  
Javad Rafinejad ◽  
Farrokh Dabiri ◽  
Piero Onorati ◽  
Olle Terenius ◽  
...  
Keyword(s):  
16S Rdna ◽  
Phylogenetic Analyses ◽  
Coi Gene ◽  
Diagnostic Tools ◽  
Morphological Identification ◽  
Species Determination ◽  
Important Species ◽  
Mitochondrial Markers ◽  
12S Rdna ◽  
Rdna Sequences

Abstract Objectives Annually, 1.2 million humans are stung by scorpions and severely affected by their venom. Some of the scorpion species of medical importance have a similar morphology to species with low toxicity. To establish diagnostic tools for surveying scorpions, the current study was conducted to generate three mitochondrial markers, Cytochrome Oxidase I (COI gene), 12S rDNA and 16S rDNA for six species of medically important Iranian scorpions: Androctonus crassicauda, Hottentotta saulcyi, Mesobuthus caucasicus, M. eupeus, Odontobuthus doriae, and Scorpio maurus. Results Phylogenetic analyses of the obtained sequences corroborated the morphological identification. For the first time, 12S rDNA sequences are reported from Androctonus crassicauda, Hottentotta saulcyi, Mesobuthus caucasicus and M. eupeus and also the 16S rDNA sequence from Hottentotta saulcyi. We conclude that the mitochondrial markers are useful for species determination among these medically important species of scorpions.

scholarly journals Directly ageing the Caribbean spiny lobster, Panulirus argus with validated band counts from gastric mill ossicles

2018 ◽  
Vol 76 (2) ◽  
pp. 442-451 ◽  
Author(s):  
Gaya Gnanalingam ◽  
Mark J Butler ◽  
Thomas R Matthews ◽  
Emily Hutchinson ◽  
Raouf Kilada
Keyword(s):  
Spiny Lobster ◽  
Age Determination ◽  
Florida Keys ◽  
Panulirus Argus ◽  
Gastric Mill ◽  
Coefficients Of Variation ◽  
The Caribbean ◽  
First Time ◽  
Reader Experience

Abstract In crustaceans, ecdysis was long believed to result in the loss and replacement of all calcified structures, precluding the use of conventional ageing methods. However, the discovery of bands in the gastric ossicles of several crustaceans with some correlation with age suggests that direct age estimation may be possible. We applied this method to a tropical spiny lobster, Panulirus argus, one of the most iconic and economically valuable species in the Caribbean. The presence of growth bands was investigated using wild lobsters of unknown age and was validated with captive reared lobsters of known age (1.5–10 years) from the Florida Keys, Florida (USA). Bands were consistently identified in ptero- and zygo-cardiac ossicles of the gastric mill and did not appear to be associated with moulting. Validation with known age animals confirms that bands form annually. Counts between independent readers were reproducible with coefficients of variation ranging from 11% to 26% depending on reader experience and the structure used. This study demonstrates, for the first time, that direct age determination of P. argus is possible.

Synopsis of the genus Bothriochloa (Poaceae: Andropogoneae) in India

Phytotaxa ◽  
2021 ◽  
Vol 516 (1) ◽  
pp. 43-58
Author(s):  
SHAHID NAWAZ LANDGE ◽  
RAJENDRA D. SHINDE
Keyword(s):  
Papua New Guinea ◽  
Morphological Study ◽  
Far East ◽  
Detailed Comparison ◽  
Disjunct Distribution ◽  
Indian Species ◽  
Taxonomic Study ◽  
Morphological Attributes ◽  
Morphological Variations ◽  
First Time

During the taxonomic study of the genus Bothriochloa from India, B. ewartiana was reported for the first time in Asia from India. Earlier, it was known only from Australia, Lesser Sunda Island (Sumbawa, Timor), Philippines (Luzon), and Papua New Guinea (Madang). We have discussed about its amphitropical disjunct distribution over a vast continental gap with respect to some variability reported in the morphological attributes. A hypothesis behind its seclusion from Far East is also discussed. The images of the habitat and habit of B. ewartiana along with its detailed comparison with a close species B. woodrovii are provided. The taxonomic limits of each Indian species of Bothriochloa along with their ranges of morphological variations and distribution have been discussed in a detail. The Indian endemic B. parameswaranii (synonym nova) has been relegated, based on the morphological study, as a new taxonomic synonym of B. insculpta. Moreover, keys to identify closely allied genera and the species of Bothriochloa in India are provided. At the end, identification, taxonomic notes and the range of variations of Dichanthium foulkesii, D. jainii & D. concanense have been discussed in a detail.

Clathrosporium retortum, a novel aeroaquatic fungus in the Sordariomycetidae (Ascomycota) from Brazil

Phytotaxa ◽  
2015 ◽  
Vol 239 (1) ◽  
pp. 17
Author(s):  
Larissa Bernardino Moro ◽  
Gregorio Delgado ◽  
Iracema Helena SCHOENLEIN-CRUSIUS
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Type Specimen ◽  
Molecular Data ◽  
Sao Paulo ◽  
São Paulo ◽  
Present Fungus ◽  
Broad Concept ◽  
Morphological And Molecular Data ◽  
First Time

Clathrosporium retortum sp. nov., collected on submerged mixed leaf litter samples at Ilha do Cardoso State Park, São Paulo state, Brazil, is described based on morphological and molecular data. The fungus is characterized by forming whitish, dense, subglobose to irregular propagules, hyaline to subhyaline when young, subhyaline to dark brown at maturity, that are formed by densely interwoven conidial filaments with each conidial cell repeatedly branching bilaterally or occasionally unilaterally. Phylogenetic analyses using partial LSU nrDNA sequence data suggest that C. retortum belongs in the Sordariomycetes (Ascomycota) where it forms a well-supported clade with Clohesia corticola in the Sordariomycetidae, but its ordinal or familial placement remains unresolved. Its phylogenetic placement confirms the polyphyletic nature of aeroaquatic fungi like Clathrosporium, as it was distantly related to one available sequence in GenBank named as C. intricatum, the type species, which is phylogenetically related to the Helotiales (Leotiomycetes). However, due to lack of authenticity of the identity of this sequence with the type specimen of C. intricatum, a broad concept of Clathrosporium is tentatively adopted here to accommodate the present fungus instead of introducing a new genus. Beverwykella clathrata, Helicoön septatissimum and Peyronelina glomerulata are recorded for the first time from Brazil. Cancellidium applanatum and Candelabrum brocchiatum are new records for the state of São Paulo.

scholarly journals Identification the Presence of Clade 2.3.2.1c-Avian Influenza H5N1, a Highly Pathogenic Virus in Iraq, 2018

2019 ◽  
Vol 42 (2) ◽  
pp. 189-194
Author(s):  
Furkan Alaraji ◽  
Hussam Muhsen ◽  
Abdullah O. Alhatami ◽  
Yahia Ismail Khudhair
Keyword(s):  
Avian Influenza ◽  
Serological Test ◽  
Phylogenetic Analyses ◽  
Highly Pathogenic ◽  
Glycoprotein Gene ◽  
Pathogenic Virus ◽  
Hpai H5n1 ◽  
First Time ◽  
Clade 2.3.2.1C ◽  
Influenza H5n1

Abstract For the first time in Iraq, we identified in March, 2018 the presence of a highly virulent avian influenza virus (AIV), H5N1 (Clade 2.3.2.1c), causing highly pathogenic avian influenza (HPAI) in poultry farms, Iraq,. The identification of the virus was done using a rapid serological test, a real time-qPCR, and glycoprotein gene sequencing. Using sequencing and phylogenetic analyses, the clade 2.3.2.1c virus was recorded to be clustered, with high similarity to Asian and West African AIV, HPAI H5N1 from Ivory Coast identified in 2015. According to our knowledge, there was no previous detection of the clade 2.3.2.1c made in Iraq. Our results provide evidence that high risk of HPAI H5 outbreaks might be present in Iraq, and this needs to lead to high quality surveillance targeting of wild and domestic birds for early diagnosis of HPAI. The current work provides feasible and accurate approaches for understanding the evolution of HPAI H5 virus in different countries around the world.

scholarly journals Delimitation, new species and teleomorph-anamorph relationships in Codinaea, Dendrophoma, Paragaeumannomyces and Striatosphaeria (Chaetosphaeriaceae)

MycoKeys ◽  
2020 ◽  
Vol 74 ◽  
pp. 17-74
Author(s):  
Martina Réblová ◽  
Jana Nekvindová ◽  
Jacques Fournier ◽  
Andrew N. Miller
Keyword(s):  
New Species ◽  
Type Species ◽  
Morphological Traits ◽  
Phylogenetic Analyses ◽  
Axenic Culture ◽  
Monophyletic Clade ◽  
Morphological Comparison ◽  
The Family ◽  
Terrestrial Habitats ◽  
First Time

The Chaetosphaeriaceae are a diverse group of pigmented, predominantly phialidic hyphomycetes comprised of several holomorphic genera including Chaetosphaeria, the most prominent genus of the family. Although the morphology of the teleomorphs of the majority of Chaetosphaeria is rather uniform, their associated anamorphs primarily exhibit the variability and evolutionary change observed in the genus. An exception from the morphological monotony among Chaetosphaeria species is a group characterised by scolecosporous, hyaline to light pink, multiseptate, asymmetrical ascospores and a unique three-layered ascomatal wall. Paragaeumannomyces sphaerocellularis, the type species of the genus, exhibits these morphological traits and is compared with similar Chaetosphaeria with craspedodidymum- and chloridium-like synanamorphs. Morphological comparison and phylogenetic analyses of the combined ITS-28S sequences of 35 isolates and vouchers with these characteristics revealed a strongly-supported, morphologically well-delimited clade in the Chaetosphaeriaceae containing 16 species. The generic name Paragaeumannomyces is applied to this monophyletic clade; eight new combinations and five new species, i.e. P. abietinussp. nov., P. eleganssp. nov., P. granulatussp. nov., P. sabinianussp. nov. and P. smokiensissp. nov., are proposed. A key to Paragaeumannomyces is provided. Using morphology, cultivation studies and phylogenetic analyses of ITS and 28S rDNA, two additional new species from freshwater and terrestrial habitats, Codinaea paniculatasp. nov. and Striatosphaeria castaneasp. nov., are described in the family. A codinaea-like anamorph of S. castanea forms conidia with setulae at each end in axenic culture; this feature expands the known morphology of Striatosphaeria. A chaetosphaeria-like teleomorph is experimentally linked to Dendrophoma cytisporoides, a sporodochial hyphomycete and type species of Dendrophoma, for the first time.

Morphological variations in flame-deposited diamond

1994 ◽  
Vol 9 (3) ◽  
pp. 625-630 ◽  
Author(s):  
E.A. Frey ◽  
A. Tamhane ◽  
J.H.D. Rebello ◽  
S.A. Dregia ◽  
V.V. Subramaniam
Keyword(s):  
Vertical Position ◽  
Vertical Coordinate ◽  
Open Atmosphere ◽  
Morphological Variations ◽  
First Time

An oxy-acetylene flame, impinging vertically upward on an Si(001) substrate, is systematically examined for morphological variations in the resulting diamond deposits. The flame is operated under near neutral (O2/C2H2 ratio near 1.0) conditions in the unconfined, open atmosphere. Singly twinned crystal morphologies in addition to the usual (001) faceted structures are observed and reported for the first time. Similar morphological variations are observed along the radial as well as the axial (vertical) coordinate directions in the flame. Large changes in morphology are observed for changes in vertical position as small as 50 μm.

Molecular identification of cyst-forming nematodes (Heteroderidae) from Iran and a phylogeny based on ITS-rDNA sequences

Nematology ◽  
2003 ◽  
Vol 5 (1) ◽  
pp. 99-111 ◽  
Author(s):  
Zahra Tanha Maafi ◽  
Sergei Subbotin ◽  
Maurice Moens
Keyword(s):  
Phylogenetic Analyses ◽  
Species Level ◽  
Its Rdna ◽  
Heterodera Avenae ◽  
Published Data ◽  
Rdna Sequences ◽  
First Time ◽  
Group Species ◽  
High Support ◽  
Different Parts

Abstract RFLP and sequences of ITS-rDNA of 45 populations of cyst-forming nematodes collected from different parts of Iran were analysed and identified as representatives of 21 species. Eight enzymes generated RFLP for all studied populations. Comparison of RFLP profiles and sequences of the ITS regions with published data confirmed the presence of Heterodera avenae, H. filipjevi, H. glycines, H. hordecalis, H. latipons, H. schachtii and H. trifolii in Iran. RFLP patterns and ITS sequences for H. elachista, H. turcomanica, H. mothi and C. cacti were obtained for the first time in this study. Heterodera humuli, H. goettingiana, H. fici, H. elachista, H. turcomanica and Cactodera cacti are recorded for the first time in Iran. These results correspond with morphological and morphometric identification of the populations. Several populations were not identified at the species level and are attributed to Heterodera sp.; some of these may correspond to new species. Twenty-one new sequences from Iranian cyst-forming nematodes and 36 known sequences were used for the phylogenetic analyses. The cyst-forming nematodes formed several clades corresponding to their morphological features. Heterodera mothi and H. elachista clustered with high support with other Cyperi group species and H. turcomanica formed a moderately to highly supported clade with the Humuli group.

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