Environmentally-Driven Variation in the Physiology of a New Caledonian Reef Coral

Given the widespread threats to coral reefs, scientists have lost the opportunity to understand the basic biology of “pristine” corals whose physiologies have not been markedly perturbed by human activity. For instance, high temperature-induced bleaching has been occurring annually since 2014 in New Caledonia. Because most corals cannot withstand repeated years when bleaching occurs, an analysis was undertaken to showcase coral behavior in a period just before the onset of “annual severe bleaching” (ASB; November 2013) such that future generations might know how these corals functioned in their last bleaching-free year. Pocillopora damicornis colonies were sampled across a variety of environmental gradients, and a subset was sampled during both day and night to understand how their molecular biology changes upon cessation of dinoflagellate photosynthesis. Of the 13 environmental parameters tested, sampling time (i.e., light) most significantly affected coral molecular physiology, and expression levels of a number of both host and Symbiodiniaceae genes demonstrated significant diel variation; endosymbiont mRNA expression was more temporally variable than that of their anthozoan hosts. Furthermore, expression of all stress-targeted genes in both eukaryotic compartments of the holobiont was high, even in isolated, uninhabited, federally protected atolls of the country’s far northwest. Whether this degree of sub-cellular stress reflects cumulative climate change impacts or, instead, a stress-hardened phenotype, will be unveiled through assessing the fates of these corals in the wake of increasingly frequent marine heatwaves.

Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics

The diel cycle is of enormous biological importance in that it imposes temporal structure on ecosystem productivity. In the world’s oceans, microorganisms form complex communities that carry out about half of photosynthesis and the bulk of life-sustaining nutrient cycling. How the functioning of microbial communities is impacted by day and night periods in surface seawater remains to be elucidated. In this study, we compared the day and night metaproteomes of the free-living and the particle-attached bacterial fractions from picoplanktonic communities sampled from the northwest Mediterranean Sea surface. Our results showed similar taxonomic distribution of free-living and particle-attached bacterial populations, with Alphaproteobacteria, Gammaproteobacteria and Cyanobacteria being the most active members. Comparison of the day and night metaproteomes revealed that free-living and particle-attached bacteria were more active during the day and the night, respectively. Interestingly, protein diel variations were observed in the photoautotroph Synechococcales and in (photo)-heterotrophic bacteria such as Flavobacteriales, Pelagibacterales and Rhodobacterales. Moreover, our data demonstrated that diel cycle impacts light-dependent processes such as photosynthesis and UV-stress response in Synechococcales and Rhodobacterales, respectively, while the protein regulation from the ubiquitous Pelagibacterales remained stable over time. This study unravels, for the first time, the diel variation in the protein expression of major free-living and particle-attached microbial players at the sea surface, totaling an analysis of eight metaproteomes.

Diel variation of aquatic insect drift in streams of Southern Brazil

Some organisms, such as aquatic insects, are transported from the upstream to downstream region of streams through a process called drift. This process occurs in passive and active ways and can be variable throughout the day, mainly between the nocturnal and diurnal periods. Here, we evaluate the periodicity of the drift of aquatic insects in two streams of the Middle Iguaçu basin, southern region of Brazil. We predicted that the drift of aquatic insects brings the highest richness, diversity and abundance during the nocturnal period, compared to the diurnal period. In addition, we expected that the composition of species is different between these periods. In each stream, aquatic insect sampling was carried out 10 times, for 24 hours, using drift nets. A total of 2,114 aquatic insect specimens were recorded, distributed in 26 families. Of these families, 20 were recorded during the diurnal period and 24 during the nocturnal period. Our results showed an increase in the diversity and abundance of aquatic insect drift in the nocturnal period. However, only abundance was significantly different between the periods. We attribute the higher abundance in nocturnal drift possibly to biological interactions. Thus, nocturnal drift can be a strategy of some aquatic insects to avoid visual predation by other invertebrates and/or vertebrates, in Neotropical streams. We highlight the importance of our study, because it can be used for comparison in surveys of lotic environments that have been impacted by human activity (e.g. by dam construction), which can alter the water flow, and consequently the pattern of insect drift.

Diel Variation of Viral Production in a Coastal Subtropical Marine System

Viral production (VP) and bacterial mortality by viral lysis critically influence the production and mortality of aquatic bacteria. Although bacterial production, mortality by viral lysis, and viral density have been found to exhibit diel variations, the diel change in viral production has rarely been investigated. In this study, we conducted two diel dilution incubation experiments in a semi-enclosed, nutrient-rich coastal region in northeastern Taiwan to estimate the diel viral production and the mortality by viral lysis. We also compared two methods (linear regression between viral density and time versus arithmetic mean of VP during incubation) of estimating viral production. We found that viral production estimated by linear regression and bacterial mortality by viral lysis were higher during the daytime than during the nighttime. A possible explanation for the high viral production at daytime is that the bacterial community was composed of cell types with higher burst sizes at daytime. We further argued that the classical linear regression method can be used only when viral density significantly linearly increases with time, which does not always occur in dilution incubations. This study offered observations of diel variation in viral dynamics and discussed the methods estimating viral production in a marine environment.

Spatio-temporal summer distribution of Cumberland Sound beluga whales (Delphinapterus leucas) in Clearwater Fiord

The Cumberland Sound (Nunavut, Canada) beluga whale (Delphinapterus leucas) population has been designated as threatened and updated biological information about summer distribution is required for a sound recovery plan. Variation in aerial survey counts are speculated to occur due to movement of belugas in and out of the fiord, and there is still uncertainty related to their distribution within key summer habitat. To address these knowledge gaps, non-invasive passive acoustic monitoring (PAM) systems were deployed in August of 2010 and 2011. An automated detector was used to determine presence/absence and quantify calls by recorder site. Results were verified by partial manual analysis of 20% of the files. The detector had a minimum accuracy of 85% for presence/absence and 42% for call quantification. Belugas were detected primarily at the uppermost site of Clearwater Fiord, with detections subsiding with increasing proximity to the fiord entrance. Diel variation in call patterns were quantified at two separate sites in different years, but no correlation was observed between tidal cycles and number of detections. This study indicates that Cumberland Sound beluga may prefer sites at the head of Clearwater Fiord. Further research is required to identify which environmental variables contribute to this observed summer distribution.

Diel Variation of Hydrochemistry and Carbon Flux in the Banzhai River, SW China

This study was undertaken in the Banzhai, a small groundwater-fed stream flowing over carbonate karst terrain in the southwest of Guizhou, China. To assess the biogeochemical processes behind carbon fluxes and sinks and calculate the end-member contribution to the geological carbon sink, samples were collected at a 2-h sampling interval during a two-day period, and the diel-variation of δ13CDIC, δ13CPOC, and C/N were analyzed. During the sampling period, temperature, pH, electrical conductivity (EC), dissolved oxygen (Do), and chlorophyll were measured at a 15-min interval using in situ sensors. The results showed that (1) the hydro-chemical variations reflected the photosynthesis of subaquatic plants and degassing. These processes likely turned a part of HCO3- to organic carbon, which subsequently precipitated. (2) The 13C isotope ratios indicated a varying intensity of photosynthesis and degassing during the HCO3- migration process. Moreover, subaquatic plants changed their metabolic pathway from C3 to C4 carbon fixation due to the lack of CO2 in the water and utilized HCO3- in the water as their carbon source. (3) The net carbon sink flux was 1784.54 kg CO2, where carbonate weathering, the biological carbon pump, and weathering of silicate rocks accounted for 85.80 %, 13.64 %, and 0.56 %, respectively. (4) In the Banzhai ground river, the DIC during the migration process was mainly lost through degassing, allogenic acid, and consumption by photosynthesis of subaquatic plants.

Hurricane impacts on a coral reef soundscape

Soundscape ecology is an emerging field in both terrestrial and aquatic ecosystems, and provides a powerful approach for assessing habitat quality and the ecological response of sound-producing species to natural and anthropogenic perturbations. Little is known of how underwater soundscapes respond during and after severe episodic disturbances, such as hurricanes. This study addresses the impacts of Hurricane Irma on the coral reef soundscape at two spur-and-groove fore-reef sites within the Florida Keys USA, using passive acoustic data collected before and during the storm at Western Dry Rocks (WDR) and before, during and after the storm at Eastern Sambo (ESB). As the storm passed, the cumulative acoustic exposure near the seabed at these sites was comparable to a small vessel operating continuously overhead for 1–2 weeks. Before the storm, sound pressure levels (SPLs) showed a distinct pattern of low frequency diel variation and increased high frequency sound during crepuscular periods. The low frequency band was partitioned in two groups representative of soniferous reef fish, whereas the high frequency band represented snapping shrimp sound production. Daily daytime patterns in low-frequency sound production largely persisted in the weeks following the hurricane. Crepuscular sound production by snapping shrimp was maintained post-hurricane with only a small shift (~1.5dB) in the level of daytime vs nighttime sound production for this high frequency band. This study suggests that on short time scales, temporal patterns in the coral reef soundscape were relatively resilient to acoustic energy exposure during the storm, as well as changes in the benthic habitat and environmental conditions resulting from hurricane damage.