Cellular perception of growth rate and the mechanistic origin of bacterial growth laws

Cells organize many of their activities in accordance to how fast they grow. Yet it is not clear how they perceive their rate of growth, which involves thousands of reactions. Through quantitative studies of E. coli under exponential growth and during growth transitions, here we show that the alarmone ppGpp senses the rate of translational elongation by ribosomes, and together with its roles in controlling ribosome biogenesis and activity, closes a key regulatory circuit that enables the cell to perceive the rate of its own growth for a broad class of growth-limiting conditions. This perception provides the molecular basis for the emergence of simple relations among the cellular ribosome content, translational elongation rate, and the growth rate, as manifested by bacterial growth laws. The findings here provide a rare view of how cells manage to collapse the complex, high-dimensional dynamics of the underlying molecular processes to perceive and regulate emergent cellular behaviors, an example of dimension reduction performed by the cells themselves.

Overexpression of a SOC1-Related Gene Promotes Bud Break in Ecodormant Poplars

Perennial species in the boreal and temperate regions are subject to extreme annual variations in light and temperature. They precisely adapt to seasonal changes by synchronizing cycles of growth and dormancy with external cues. Annual dormancy–growth transitions and flowering involve factors that integrate environmental and endogenous signals. MADS-box transcription factors have been extensively described in the regulation of Arabidopsis flowering. However, their participation in annual dormancy–growth transitions in trees is minimal. In this study, we investigate the function of MADS12, a Populus tremula × alba SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 (SOC1)-related gene. Our gene expression analysis reveals that MADS12 displays lower mRNA levels during the winter than during early spring and mid-spring. Moreover, MADS12 activation depends on the fulfillment of the chilling requirement. Hybrid poplars overexpressing MADS12 show no differences in growth cessation and bud set, while ecodormant plants display an early bud break, indicating that MADS12 overexpression promotes bud growth reactivation. Comparative expression analysis of available bud break-promoting genes reveals that MADS12 overexpression downregulates the GIBBERELLINS 2 OXIDASE 4 (GA2ox4), a gene involved in gibberellin catabolism. Moreover, the mid-winter to mid-spring RNAseq profiling indicates that MADS12 and GA2ox4 show antagonistic expression during bud dormancy release. Our results support MADS12 participation in the reactivation of shoot meristem growth during ecodormancy and link MADS12 activation and GA2ox4 downregulation within the temporal events that lead to poplar bud break.

FRUITFULL Is a Repressor of Apical Hook Opening in Arabidopsis thaliana

Plants adjust their architecture to a constantly changing environment, requiring adaptation of differential growth. Despite their importance, molecular switches, which define growth transitions, are largely unknown. Apical hook development in dark grown Arabidopsis thaliana (A. thaliana) seedlings serves as a suitable model for differential growth transition in plants. Here, we show that the phytohormone auxin counteracts the light-induced growth transition during apical hook opening. We, subsequently, identified genes which are inversely regulated by light and auxin. We used in silico analysis of the regulatory elements in this set of genes and subsequently used natural variation in gene expression to uncover correlations between underlying transcription factors and the in silico predicted target genes. This approach uncovered that MADS box transcription factor AGAMOUS-LIKE 8 (AGL8)/FRUITFULL (FUL) modulates apical hook opening. Our data shows that transient FUL expression represses the expression of growth stimulating genes during early phases of apical hook development and therewith guards the transition to growth promotion for apical hook opening. Here, we propose a role for FUL in setting tissue identity, thereby regulating differential growth during apical hook development.

Quartz crystals in Toba rhyolites show textures symptomatic of rapid crystallization

Textural and chemical heterogeneities in igneous quartz crystals preserve unique records of silicic magma evolution, yet their origins and applications are controversial. To improve our understanding of quartz textures and their formation, we examine those in crystal-laden rhyolites produced by the 74 ka Toba supereruption (>2800 km3) and its post-caldera extrusions. Quartz crystals in these deposits can reach unusually large sizes (10–20 mm) and are rife with imperfections and disequilibrium features, including embayments, melt inclusions, titanomagnetite and apatite inclusions, spongy morphologies, hollow faces, subgrain boundaries, multiple growth centers, and Ti-enriched arborescent zoning. Using a combination of qualitative and quantitative analyses (petrography, CL, EBSD, X-ray CT, LA-ICPMS), we determine that those textures commonly thought to signify crystal resorption, crystal deformation, synneusis, or fluctuating P–T conditions are here a consequence of rapid disequilibrium crystal growth. Most importantly, we discover that an overarching process of disequilibrium crystallization is manifested among these crystal features. We propose a model whereby early skeletal to dendritic quartz growth creates a causal sequence of textures derived from lattice mistakes that then proliferate during subsequent stages of slower polyhedral growth. In a reversed sequence, the same structural instabilities and defects form when slow polyhedral growth transitions late to fast skeletal-dendritic growth. Such morphological transitions result in texture interdependencies that become recorded in the textural-chemical stratigraphy of quartz, which may be unique to each crystal. Similar findings in petrologic experimental studies allow us to trace the textural network back to strong degrees of undercooling and supersaturation in the host melt, conditions likely introduced by dynamic magmatic processes acting on short geologic timescales. Because the textural network can manifest in single crystals, the overall morphology and chemistry of erupted quartz can reflect not only its last but its earliest growth behavior in the melt. Thus, our findings imply that thermodynamic disequilibrium crystallization can account for primary textural and chemical heterogeneities preserved in igneous quartz and may impact the application of quartz as a petrologic tool.

Growth transitions and the balance-of-payments constraint

This paper re-evaluates the recent criticisms of ‘Thirlwall's law’ against the literature on growth transitions. The unpredictable nature of growth transitions in developing economies suggests that the evidence derived from single-regime regression models, on which critics have based most of their arguments, is only suggestive about the long-run causes of growth. A rigorous test of Thirlwall's law requires a more in-depth analysis of turning points in a developing country's growth performance, and whether the growth law accurately predicts the sustainability of growth transitions. These arguments are illustrated with an application to South Africa over the period 1960–2017. The results show that it is misleading to evaluate Thirlwall's law across a single regime. Once regime shifts are controlled for, the growth law accurately predicts South Africa's growth performance during 1977–2003, and sheds light on the sustainable and unsustainable nature of growth transitions across the sub-periods 1960–1976 and 2004–2017, respectively. Since the literature on growth transitions identifies a competitive exchange rate as an initiating source of growth, rather than an individual long-run determinant, the omission of the level of the real exchange rate from the original growth law should not be regarded as a major weakness.