Diffusion and flow across shape-perturbed plasmodesmata nanopores in plants

Plasmodesmata are slender nanochannels that link neighboring plant cells and enable the exchange of nutrients and signaling molecules. Recent experiments have demonstrated significant variability in the concentric pore shape. However, the impact of these geometric fluctuations on transport capacity is unknown. Here, we consider the effects on diffusion and advection of two ideal shape perturbations: a radial displacement of the entire central desmotubule and a harmonic variation in the cytoplasmic sleeve width along the length of the pore. We use Fick’s law and the lubrication approximation to determine the diffusive current and volumetric flow rate across the pore. Our results indicate that an off-center desmotubule always increases the pressure-driven flow rate. However, the diffusive current is only enhanced for particles comparable in size to the width of the channel. In contrast, harmonic variations in the cytoplasmic sleeve width along the length of the pore reduce both the diffusive current and the pressure-driven flow. The simple models presented here demonstrate that shape perturbations can significantly influence transport across plasmodesmata nanopores.

The effect of pore shape on the Poisson ratio of porous materials

A brief review is given of the effect of porosity on the Poisson ratio of a porous material. In contrast to elastic moduli such as K, G, or E, which always decrease with the addition of pores into a matrix, the Poisson ratio [Formula: see text] may increase, decrease, or remain the same, depending on the shape of the pores, and on the Poisson ratio of the matrix phase, [Formula: see text]. In general, for a given pore shape, there is a unique critical Poisson ratio, [Formula: see text], such that the addition of pores into the matrix will cause the Poisson ratio to increase if [Formula: see text], decrease if [Formula: see text], and remain unchanged if [Formula: see text]. The critical Poisson ratio for spherical pores is 0.2, for prolate spheroidal pores is close to 0.2, and tends toward zero for thin cracks. For two-dimensional materials, [Formula: see text] for circular pores, 0.306 for squares, 0.227 for equilateral triangles, and again approaches 0 for thin cracks. The presence of a “trapped” fluid in the pore space tends to cause [Formula: see text] to increase, and for the range of parameters that may occur in rocks or concrete, this increase is more pronounced for thin crack-like pores than for equi-dimensional pores. Measurements of the Poisson ratio therefore may allow insight into pore geometry and pore fluid. If the matrix phase is strongly auxetic, small amounts of porosity will generally not cause the Poisson ratio to become positive.