Larval Fish Assemblages and Distribution Patterns in the Zhongsha Atoll (Macclesfield Bank, South China Sea)

The remote coral reef in the deep sea is one of the most important nursery grounds for many marine fishes in the South China Sea. Diversity studies on larval fishes in this area are few, and the fish information on the coral reefs ecosystem is lacking. In this study, larval fishes were sampled during the summer of 2019 from the Zhongsha Atoll in the South China Sea and identified using DNA barcodes for the first time. Ninety-five larval fish species were recognized, belonging to 37 families and 12 orders based on morphological classification and DNA barcoding identification. The larval fish collected could be assigned to three categories as reef-associated, deep-sea, and pelagic. Most of the species were small fish with low commercial value but would play an essential role in the coral reef ecosystem. Some commercial fishes, including Auxis thazard, Euthynnus affinis, Sarda orientalis, Decapterus macarellus, Lutjanus viridis, and Centropyge vrolikii, were the dominant species higher than 2% total catch. The larval fish assemblage showed distinct spatial differences responding well with the geographical conditions. The most reef-associated fish occurred inside the Atoll, and the abyssal fish presented near the edge. In addition, larval fish spread over from the southwest to northeast may reflect the oceanography effect.

Fishes regulate tail-beat kinematics to minimize speed-specific cost of transport

Energetic expenditure is an important factor in animal locomotion. Here we test the hypothesis that fishes control tail-beat kinematics to optimize energetic expenditure during undulatory swimming. We focus on two energetic indices used in swimming hydrodynamics, cost of transport and Froude efficiency. To rule out one index in favour of another, we use computational-fluid dynamics models to compare experimentally observed fish kinematics with predicted performance landscapes and identify energy-optimized kinematics for a carangiform swimmer, an anguilliform swimmer and larval fishes. By locating the areas in the predicted performance landscapes that are occupied by actual fishes, we found that fishes use combinations of tail-beat frequency and amplitude that minimize cost of transport. This energy-optimizing strategy also explains why fishes increase frequency rather than amplitude to swim faster, and why fishes swim within a narrow range of Strouhal numbers. By quantifying how undulatory-wave kinematics affect thrust, drag, and power, we explain why amplitude and frequency are not equivalent in speed control, and why Froude efficiency is not a reliable energetic indicator. These insights may inspire future research in aquatic organisms and bioinspired robotics using undulatory propulsion.

Assemblage Structure of Larval Fishes in Epipelagic and Mesopelagic Waters of the Northern Gulf of Mexico

The early life stages of fishes play a critical role in pelagic food webs and oceanic carbon cycling, yet little is known about the taxonomic composition and distribution of larval fishes in the northern Gulf of Mexico (GOM) below the epipelagic (<200 m). Here, we provide the first large-scale characterization of larval fish assemblages in the GOM across epipelagic, mesopelagic, and bathypelagic regions (0–1,500 m), using samples collected during the Natural Resource Damage Assessment conducted following the Deepwater Horizon oil spill (DWHOS). These data contain > 130,000 ichthyoplankton specimens from depth-discrete plankton samples collected across 48 stations in the GOM during six cruises conducted in 2010 and 2011. We examined indices of abundance and diversity, and used a multivariate regression tree approach to model the relationship between larval fish assemblages and environmental conditions. The total abundance of larval fish followed a generally decreasing trend with increasing depth, and family-level richness and diversity were significantly higher in the epipelagic than mesopelagic and bathypelagic regions. Fourteen distinct assemblage groups were identified within the epipelagic, with depth, surface salinity, and season contributing to the major branches separating groups. Within the mesopelagic, seven distinct assemblage groups were identified and were largely explained by variation in depth, season, and surface temperature. Bathypelagic assemblages were poorly described by environmental conditions. The most common epipelagic assemblage groups were widely distributed across the GOM, as were all mesopelagic assemblage groups, suggesting limited horizontal structuring of GOM larval fishes. Of the mesopelagic-associated fish taxa, four dominant families (Myctophidae, Gonostomatidae, Sternoptychidae, Phosichthyidae) comprised the majority of the catch in both the epipelagic (63%) and combined mesopelagic and bathypelagic (97%) regions. Dufrêne-Legendre indicator analysis confirmed that these dominant families were characteristic of epipelagic and mesopelagic assemblages; the larvae of less common mesopelagic-associated families largely identified with epipelagic assemblage groups. A lack of baseline data about the distribution patterns of early life stages of mesopelagic fishes in the GOM was apparent following the DWHOS, and these findings provide a valuable reference point in the face of future ecosystem stressors.

Evolution of Thyroid Enhancement of Embryogenesis and Early Survival

Iodine imparts protective antioxidant actions that improve the fitness of invertebrate organisms, and peptides carrying iodine initially appear to have served in a defensive capacity. Tyrosine carries multiple iodines in some echinoderms, and these peptides transferred to progeny serve both protective and signaling purposes. This parental relationship appears to be the most likely evolutionary basis for emergence of the vertebrate thyroid endocrine system, and its critically important development-promoting actions in larval and (later) fetal ontogeny. Thyroxine (T4) and Triiodothyronine (T3) induce settlement and stimulate transitions to alternative feeding modes in some echinoderms. This transgenerational relationship has been conserved and elaborated in vertebrates, including humans, which share common ancestry with echinoderms. Thyroid insufficiency is damaging or can be lethal to larval fishes; egg yolk that is insufficiently primed with maternal thyroid hormones (TH) results in compromised development and high mortality rates at the time of first-feeding. Maternally-derived TH supplied to offspring supports the onset of independent feeding in fishes (eye, mouth, lateral line, swim bladder and intestinal maturation) and survival by comparable developmental mechanisms in placental mammals. Fishes evolved precise control of TH secretion and peripheral processing; early metamorphic and feeding mode actions were joined by controlled thermogenesis in homeotherms.

Importance of prey size on investigating prey availability of larval fishes

Prey availability plays an important role in determining larval fish survival. Numerous studies have found close relationships between the density of mesozooplankton and larval fishes; however, emerging studies suggest that small-size zooplankton are more important prey for some larval fish species. One arising question is whether the size of zooplankton determines the relationship between zooplankton and larval fish community in natural environments. To address this question, we collected small-size (50–200 μm) zooplankton, mesozooplankton (> 330 μm), and larval fish using three different mesh-size (50, 330, 1000 μm, respectively) nets in the East China Sea, and examined their relationships in density. Both meso- and small-size zooplankton densities showed positive relationships with larval fish density, while the relationship is much stronger for the small-size zooplankton. Specifically, the smallest size classes (50–75 and 75–100 μm) of small-size zooplankton showed the highest positive relationships with larval fish density. Temperature, salinity, and chlorophyll-a concentration did not significantly explain larval fish density. Based on these findings, we demonstrate the importance of considering prey size when investigating prey availability for larval fishes.

Surface slicks are pelagic nurseries for diverse ocean fauna

Most marine animals have a pelagic larval phase that develops in the coastal or open ocean. The fate of larvae has profound effects on replenishment of marine populations that are critical for human and ecosystem health. Larval ecology is expected to be tightly coupled to oceanic features, but for most taxa we know little about the interactions between larvae and the pelagic environment. Here, we provide evidence that surface slicks, a common coastal convergence feature, provide nursery habitat for diverse marine larvae, including > 100 species of commercially and ecologically important fishes. The vast majority of invertebrate and larval fish taxa sampled had mean densities 2–110 times higher in slicks than in ambient water. Combining in-situ surveys with remote sensing, we estimate that slicks contain 39% of neustonic larval fishes, 26% of surface-dwelling zooplankton (prey), and 75% of floating organic debris (shelter) in our 1000 km2 study area in Hawai‘i. Results indicate late-larval fishes actively select slick habitats to capitalize on concentrations of diverse prey and shelter. By providing these survival advantages, surface slicks enhance larval supply and replenishment of adult populations from coral reef, epipelagic, and deep-water ecosystems. Our findings suggest that slicks play a critically important role in enhancing productivity in tropical marine ecosystems.

Applications and limitations of DNA barcoding in Environmental Biology

Species identification is often difficult, especially for early life-history stages, poorly known species within diverse taxa, and microbes. Molecular genetics has contributed the technique of DNA barcoding, offering a low-tech, potentially high-impact tool for identification of species. After briefly describing a range of applications, this review focus on its use for identification of larval fishes. Molecular identification of larval fishes would increase knowledge of larval fish ecology, providing insights into reproductive ecology and population dynamics, and contribute to identification and protection of critical habitat. Other applications of environmental interest include identification of species from fecal starting material and forensic investigation. Limiting application of DNA barcoding is the environmental community's unfamiliarity withthe technique and limited development of DNA sequence archives for some taxa.

Lunar rhythms in growth of larval fish

Growth and survival of larval fishes is highly variable and unpredictable. Our limited understanding of this variation constrains our ability to forecast population dynamics and effectively manage fisheries. Here we show that daily growth rates of a coral reef fish (the sixbar wrasse, Thalassoma hardwicke ) are strongly lunar-periodic and predicted by the timing of nocturnal brightness: growth was maximized when the first half of the night was dark and the second half of the night was bright. Cloud cover that obscured moonlight facilitated a ‘natural experiment’, and confirmed the effect of moonlight on growth. We suggest that lunar-periodic growth may be attributable to light-mediated suppression of diel vertical migrations of predators and prey. Accounting for such effects will improve our capacity to predict the future dynamics of marine populations, especially in response to climate-driven changes in nocturnal cloud cover and intensification of artificial light, which could lead to population declines by reducing larval survival and growth.