sequence distribution
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Author(s):  
S.E. Sadaoui ◽  
N.D.M. Phan

Coordinate measuring machines (CMMs) are the standard displacement systems used for measurements in dimensional metrology. Since measurement with a touch probe mounted on a CMM provides high accuracy, repeatability, and reliability, it has been widely used for mechanical part inspection in manufacturing. The inspection process requires the use of several sensor orientations and optimal positioning of the part in order to measure all features. Recently, the field of probing path planning has become a huge and active research field. In this paper, various techniques aimed at generating the probe paths for part inspection are reviewed. Multiple issues related to the positioning of the part to maximise accessibility, analysis of probe accessibility to measure all inspection features, optimisation of the measurement sequence, distribution of measurement points, and collision avoidance are mentioned. The common research approaches and potential algorithms in this field are also discussed in this paper.


2021 ◽  
Author(s):  
Ushnish Rana ◽  
Clifford P Brangwynne ◽  
Athanassios Z Panagiotopoulos

Liquid-liquid phase separation (LLPS) is widely utilized by the cell to organize and regulate various biochemical processes. Although the LLPS of proteins is known to occur in a sequence dependent manner, it is unclear how sequence properties dictate the nature of the phase transition and thereby influence condensed phase morphology. In this work, we have utilized grand canonical Monte Carlo simulations for a simple coarse-grained model of disordered proteins to systematically investigate how sequence distribution, sticker fraction and chain length influence the phase behavior and regulate the formation of finite-size aggregates preempting macroscopic phase separation for some sequences. We demonstrate that a normalized sequence charge decoration (SCD) parameter establishes a ``soft" criterion for predicting the underlying phase transition of a model protein. Additionally, we find that this order parameter is strongly correlated to the critical density for phase separation, highlighting an unambiguous connection between sequence distribution and condensed phase density. Results obtained from an analysis of the order parameter reveals that at sufficiently long chain lengths, the vast majority of sequences are likely to phase separate. Our results predict that classical LLPS should be the dominant phase transition for disordered proteins and suggests a possible reason behind recent findings of widespread phase separation throughout living cells.


2020 ◽  
Vol 53 (18) ◽  
pp. 8032-8040
Author(s):  
Arnaud Wolf ◽  
Jessica S. Desport ◽  
Reiner Dieden ◽  
Gilles Frache ◽  
Marc Weydert ◽  
...  

2020 ◽  
Vol 1002 ◽  
pp. 66-74
Author(s):  
Ameen Hadi Mohammed ◽  
Tamador Ali Mahmood ◽  
Selvana Adwar Yousif ◽  
Aminu Musa ◽  
Nerodh Nasser Dally

The monomer phenyl acrylamide was synthesized by reacting acrylamide with chloro benzene in the presence of pyridine. Copolymer of phenyl acrylamide (PAM) with methyl methacrylate (MMA) was synthesized by free radical technique using dimethylsulfoxide (DMSO) as solvent and benzoyl peroxide (BPO) as initiator. The overall conversion was kept low (≤ 15% wt/wt) for all studies copolymers samples. The synthesized copolymers were characterized using fourier transform infrared spectroscopy (FT-IR), and their thermal properties were studied by thermogravimetric analysis (TGA) and differential scanning calorimetry (DSC). The copolymers compositions were determined by elemental analysis. The monomer reactivity ratios have been calculated by linearization methods proposed by Kelen-Tudos and Fineman-Ross. The derived reactivity ratios (r1, r2) for (PAM-co-MMA) are: (0.03, 0.593). The microstructure of copolymers and sequence distribution of monomers in the copolymers were calculated by statistical method based on the average reactivity ratios and found that these values are in agreement with the derived reactivity ratios. Copolymers of PAM with MMA formed alternating copolymers.


2020 ◽  
pp. 01-09
Author(s):  
Ameen Hadi Mohammed ◽  
Susan Rasheed Jubair

Copolymer of acrylamide (AM) with methyl methacrylate (MMA) was synthesized by free radical technique using dimethylsulfoxide (DMSO) as solvent and benzoyl peroxide (BPO) as initiator. The overall conversion was kept low (≤ 15% wt/wt) for all studies copolymer’s samples. The synthesized copolymers were characterized using fourier transform infrared spectroscopy (FT-IR), and their thermal properties were studied by thermogravimetric analysis (TGA) and differential scanning calorimetry (DSC). The copolymers compositions were determined by elemental analysis. The monomer reactivity ratios have been calculated by linearization methods proposed by Kelen-Tudos and Fineman-Ross. The derived reactivity ratios (r1, r2) for (AM-co-MMA) are: (0.03, 0.593). The microstructure of copolymers and sequence distribution of monomers in the copolymers were calculated by statistical method based on the average reactivity ratios and found that these values are in agreement with the derived reactivity ratios. Copolymers of AM with MMA formed alternating copolymers. Keywords: Acrylamide; Methyl methacrylate; Reactivity ratios; Sequence distribution


2019 ◽  
Vol 16 (2) ◽  
pp. 0345
Author(s):  
Ameen Hadi Mohammed

            The organation ⁄monomer N-naphthylacrylamide (NAA) was prepared; subsequently the synthesized monomer was successfully copolymerized with acrylicacid (AA) and methylacrylate (MA) by free radical technique using dry benzene as solvent and benzoyl peroxide (BPO) as initiator. The overall conversion was kept low (≤ 10% wt/wt) for all studies copolymers samples. The synthesized monomer and copolymers were characterized using Fourier transform infrared spectroscopy (FT-IR), and their thermal properties were studied by DSC and TGA. The copolymers compositions were determined by elemental analysis. Kelen-Tudes and Finmman-Ross graphical procedures were employed to determine the monomers reactivity ratios. The derived reactivity ratios (r1, r2) are: (0.048, 0.687) for (NAA-co-AA) and (0.066, 0.346) for (NAA-co-MA). Based on the average reactivity ratios, sequence distribution of monomers in the copolymers and the microstructure of copolymers were calculated by statistical method and found that these values are in agreement with the derived reactivity ratios.


2019 ◽  
Vol 16 (2) ◽  
pp. 0345 ◽  
Author(s):  
Ameen Hadi Mohammed

            The organation ⁄monomer N-naphthylacrylamide (NAA) was prepared; subsequently the synthesized monomer was successfully copolymerized with acrylicacid (AA) and methylacrylate (MA) by free radical technique using dry benzene as solvent and benzoyl peroxide (BPO) as initiator. The overall conversion was kept low (≤ 10% wt/wt) for all studies copolymers samples. The synthesized monomer and copolymers were characterized using Fourier transform infrared spectroscopy (FT-IR), and their thermal properties were studied by DSC and TGA. The copolymers compositions were determined by elemental analysis. Kelen-Tudes and Finmman-Ross graphical procedures were employed to determine the monomers reactivity ratios. The derived reactivity ratios (r1, r2) are: (0.048, 0.687) for (NAA-co-AA) and (0.066, 0.346) for (NAA-co-MA). Based on the average reactivity ratios, sequence distribution of monomers in the copolymers and the microstructure of copolymers were calculated by statistical method and found that these values are in agreement with the derived reactivity ratios.


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