Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas

Advancing extensive cattle production is a major threat to biodiversity conservation in Amazonia. The dominant vegetation cover has a drastic impact on soil microbial communities, affecting their composition, structure, and ecological services. Herein, we explored relationships between land-use, soil types, and forest floor compartments on the prokaryotic metacommunity structuring in Western Amazonia. Soil samples were taken in sites under high anthropogenic pressure and distributed along a ±800 km gradient. Additionally, the litter and a root layer, characteristic of the forest environment, were sampled. DNA was extracted, and metacommunity composition and structure were assessed through 16S rRNA gene sequencing. Prokaryotic metacommunities in the bulk soil were strongly affected by pH, base and aluminum saturation, Ca + Mg concentration, the sum of bases, and silt percentage, due to land-use management and natural differences among the soil types. Higher alpha, beta, and gamma diversities were observed in sites with higher soil pH and fertility, such as pasture soils or fertile soils of the state of Acre. When taking litter and root layer communities into account, the beta diversity was significantly higher in the forest floor than in pasture bulk soil for all study regions. Our results show that the forest floor’s prokaryotic metacommunity performs a spatial turnover hitherto underestimated to the regional scale of diversity.

Urban market amplifies strong species selectivity in Amazonian artisanal fisheries

Despite Amazonia possessing the highest freshwater biodiversity on Earth, urban landing data show how huge fishing pressure is placed on only a dozen species. However, truly characterising the fishery and understanding the drivers of species selectivity is challenging, given the neglect of artisanal fishing activity, who may catch most of the Amazon’s fish. We register the catch of 824 fishing trips by interviewing artisanal fishers in their rural riverside communities. We use these data to characterise the artisanal fishery of the Rio Purus, the main fish source sub-system for the Amazon’s largest city (Manaus), and investigate the factors determining catch composition. Fishers caught 80 fish species, yet just four species made up over half of the harvested biomass. Urban markets appear to drive greater selectivity, with a significantly lower species diversity in commercial compared to subsistence catches. Fish catch composition varied significantly both seasonally and with geographical remoteness from Manaus. The spatial turnover in catch composition appears to be driven by urban access, with more commercially important species dominating where Manaus-based fish-buyers frequent. Our data may partially explain observed overfishing in some commercially important species, particularly as most Amazonians now live in urban areas.

Diversity partitioning and community structure of epiphytic bryophytes along an elevational gradient in the north-eastern Madagascar

Understanding spatial variation in species composition of different communities is key to understanding the processes that generate and maintain biodiversity. The partitioning of diversity into hierarchical scale-related components is an interesting approach to quantitatively defining the overall net biodiversity from hierarchically scaled studies and is a useful method in studies of conservation biology and restoration. This paper deals with the additive partitioning of the overall diversity and the partitioning of beta-diversity of epiphytic bryophytes along an elevational gradient in Madagascar. The aim is to describe the variation in species composition between sites and to elucidate why different species occur in different communities in the Marojejy National Park (250–2050 m). We looked at the contribution of α and β diversity to total diversity were calculated from four hierarchical scales: microhabitat (50 cm2), quadrat (4 m2), plot (100 m2) and elevation (every 200 m). Furthermore, we documented how the two components of beta-diversity (turnover and nestedness) are influenced by variation in elevation. Our result suggests that more variation in species richness was found within the elevational scales, than within microplot scales, confirming that beta diversity at the largest sampling scale is the largest contributor to the total diversity. It indicates that bryophyte species among sample within each level are a subsample of the same species pool. This study shows evidence that the beta-diversity of epiphytic bryophyte assemblages is dominated by high spatial turnover due to recruitment of new species along the Marojejy transect, a clear pattern for mountains.

Land-use and forest floor explain prokaryotic metacommunity structuring and spatial turnover in Amazonian forest-to-pasture conversion areas

ABSTRACTAdvancing extensive cattle production shifts the forest landscape and is considered one of the main drivers against biodiversity conservation in the Brazilian Amazonia. Considering soil as an ecosystem it becomes vital to identify the effects of land-use changes on soil microbial communities, structure, as well as its ecological functions and services. Herein, we explored relationships between land-use, soil types and forest floor (i.e., association between litter, root layer and bulk soil) on the prokaryotic metacommunity structuring in the Western Amazonia. Sites under high anthropogenic pressure were evaluated along a gradient of ± 800 km. Prokaryotic metacommunity are synergistically affected by soil types and land-use systems. Especially, the gradient of soil fertility and land-use shapes the structuring of the metacommunity and determines its composition. Forest-to-pasture conversion increases alpha, beta, and gamma diversities when considering only the prokaryotes from the bulk soil. Beta diversity was significantly higher in all forests when the litter and root layer were taken into account with the bulk soil. Our argumentation is that the forest floor harbors a prokaryotic metacommunity that adds at the regional scale of diversity a spatial turnover hitherto underestimated. Our findings highlight the risks of biodiversity loss and, consequently, the soil microbial diversity maintenance in tropical forests.

The role of landscape history in the distribution and conservation of threatened flora in the Southwest Australian Floristic Region

The flora of the Southwest Australian Floristic Region (SWAFR) is characterized by remarkable richness, endemism, spatial turnover and numbers of threatened taxa. Increasingly, evolutionary history is recognized as contributing to SWAFR biogeographical patterns, culminating in the theory of old, climatically buffered, infertile landscapes (OCBILs) [and their counterpoint: young, often disturbed, fertile landscapes (YODFELs)]. For the SWAFR, we: (1) developed a spatially explicit distribution of OCBILs and YODFELs; (2) analysed the spatial distribution of Threatened and Priority (Data Deficient) flora; and (3) tested the hypotheses that Threatened and Priority flora will be most strongly represented in OCBILs and will have small geographical ranges. We found that OCBILs and YODFELs dominated spatially distinct portions of the SWAFR. Threatened and Priority flora were not uniformly or randomly distributed and were more strongly characterized by narrow-range endemics than the non-Threatened flora. The occurrence of Threatened and Priority flora was positively correlated with the age of surface exposure of landscape features and unique geological features of limited extent (if not YODFELs). The concentration of Threatened flora in OCBILs provides the opportunity to improve conservation management through investigations of how plant traits favoured by evolution in OCBILs might increase or decrease the susceptibility of the flora to anthropogenic threats.

Seasonality in Spatial Turnover of Bacterioplankton Along an Ecological Gradient in the East China Sea: Biogeographic Patterns, Processes and Drivers

Seasonal succession in bacterioplankton is a common process in marine waters. However, seasonality in their spatial turnover is largely unknown. Here, we investigated spatial turnover of surface bacterioplankton along a nearshore-to-offshore gradient in the East China Sea across four seasons. Although seasonality overwhelmed spatial variability of bacterioplankton composition, we found significant spatial turnover of bacterioplankton along the gradient as well as overall seasonal consistency in biogeographic patterns (including distance–decay relationship and covariation of community composition with distance to shore) with subtle changes. Bacterioplankton assembly was consistently dominated by deterministic mechanisms across seasons, with changes in specific processes. We found overall seasonal consistency in abiotic factors (mainly salinity and nitrogen and phosphorus nutrients) shaping bacterioplankton composition, while phytoplankton showed a similar influence as abiotic factors only in spring. Although key taxa responsible for bacterioplankton spatial turnover showed certain season-specificity, seasonal switching between closely related taxa occurred within most dominant families. Moreover, many close relatives showed different responding patterns to the environmental gradients in different seasons, suggesting their differences in both seasonally climatic and spatially environmental preferences. Our results provide insights into seasonal consistency and variability in spatial turnover of bacterioplankton in terms of biogeographic patterns, ecological processes, and external and internal drivers.

The Effect of Anthropization on Sarcophagidae (Diptera: Calyptratae) Community Structure: An Assessment on Different Types of Habitats in the Humid Chaco Ecoregion of Argentina

Sarcophagidae (Diptera) are of great interest from a veterinary, medical, and forensic viewpoint, and are potential bioindicators for environmental impact assessments. In this study, we evaluated changes in abundance, species richness, and diversity of flesh flies in different habitat types in the Humid Chaco ecoregion of South America: 1) anthropized habitats: urban, cattle farm, and alfalfa crop, and 2) natural habitats: savanna and forest. We hypothesized that sarcophagid fly community parameters are affected by the anthropization and that spatial turnover will contribute more to the overall beta diversity than nestedness between habitats. In each habitat, samplings were conducted monthly from March 2015 to February 2016 in 25 sites, 5 per habitat, totaling 300 independent samples at the end of the study. We collected 5,790 Sarcophagidae (55 species). Community parameters of Sarcophagidae were evaluated and compared. The ecological effects of anthropization and habitat type were observed in the present study. As expected, our results showed the highest abundance, species richness, and diversity in the savanna and forest habitats (natural), whereas the lowest values were registered in the urban and alfalfa crop habitats, supporting the hypotheses of anthropization as the main driver of diversity loss. In addition, sarcophagid assemblages differed between all habitats and the overall dissimilarity was structured by spatial turnover. The main conclusion of this research is that flesh fly community structure is greatly affected by anthropization and habitat type, and this would be related to canopy cover and microclimate conditions of each environment.