On the evaluation of the Gottfried sum and d̄−ū asymmetry with the use of the TMM method

In this paper, we obtain the integrated flavor asymmetry of the sea quarks in the proton, [Formula: see text], with the help of the truncated moments approach elaborated in our previous papers. We use the difference between the light sea-quark distributions [Formula: see text] extracted from Drell–Yan (DY) NuSea/E866 measurements of the cross-section ratio [Formula: see text] and from the recent global analysis of deep inelastic scattering (DIS) [Formula: see text] data incorporating the reanalyzed neutron structure function. In our analysis, we also include the most recent DY data from the Fermilab SeaQuest/E906 experiment.

Use of a 4-circle goniometer for neutron and X-ray diffractometer in the study of single crystals

Objectives. This study described the 4-circle goniometer Syntex P1N and its possible applications in X-ray and neutron structure analysis of single crystals.Methods. The 4-circle goniometer Syntex P1N, due to its high-precision mechanical characteristics and individual components from domestic equipment (sets of DRON type X-ray diffractometers), formed the basis for developing an instrument complex for X-ray and neutron-structure studies.Results. The neutron diffractometer was upgraded based on the Syntex P1N goniometer. Therefore, the 10BF3-based end neutron counter, included in the diffractometer kit, was replaced by the 3He-based domestic side counter, SNM-16. Such a significant reduction in the linear dimensions of the detector allowed us to expand the range of measured angles of 2θ from 90° to 140° and increase the accuracy of the measured interplanar distances accordingly. The goniometer was adjusted relative to the primary neutron beam by placing it on a specially designed plate. Highly accurate measured parameters of the unit cell and the intensity of the reflexes were achieved by optimizing the installation geometry and the protection of the goniometer and detector. Based on the Syntex P1N goniometer, an instrument complex for X-ray diffraction studies has also been developed. Both the developed X-ray and the upgraded neutronography facilities were used to perform experiments to measure the unit cell parameters, the coordinates of atoms, and the parameters of their thermal vibrations on several crystals of domestic synthetic samples: diamond C, silicon Si, halite, or rock salt NaCl, and corundum α-Al2O3. An excellent correlation was achieved by comparing the data obtained with the corresponding chemical crystals’ parameters and reference samples recommended by the International Union of Crystallographers.Conclusions. This paper described a neutron installation and a Syntex P1N neutron diffractometer for the study of single crystals. Based on the latter, an instrument complex for X-ray diffraction studies has also been developed. Experiments on standard samples have shown a high level of accuracy in measuring the lattice parameters, the coordinates of atoms, and the parameters of their thermal vibrations on both the X-ray and neutron diffractometers.

Unusual zwitterionic catalytic site of SARS–CoV-2 main protease revealed by neutron crystallography

The main protease (3CL Mpro) from SARS–CoV-2, the etiological agent of COVID-19, is an essential enzyme for viral replication. 3CL Mpro possesses an unusual catalytic dyad composed of Cys145 and His41 residues. A critical question in the field has been what the protonation states of the ionizable residues in the substrate-binding active-site cavity are; resolving this point would help understand the catalytic details of the enzyme and inform rational drug development against this pernicious virus. Here, we present the room-temperature neutron structure of 3CL Mpro, which allowed direct determination of hydrogen atom positions and, hence, protonation states in the protease. We observe that the catalytic site natively adopts a zwitterionic reactive form in which Cys145 is in the negatively charged thiolate state and His41 is doubly protonated and positively charged, instead of the neutral unreactive state usually envisaged. The neutron structure also identified the protonation states, and thus electrical charges, of all other amino acid residues and revealed intricate hydrogen-bonding networks in the active-site cavity and at the dimer interface. The fine atomic details present in this structure were made possible by the unique scattering properties of the neutron, which is an ideal probe for locating hydrogen positions and experimentally determining protonation states at near-physiological temperature. Our observations provide critical information for structure-assisted and computational drug design, allowing precise tailoring of inhibitors to the enzyme's electrostatic environment.