A process-based assessment of landscape change and salmon habitat losses in the Chehalis River basin, USA

Identifying necessary stream and watershed restoration actions requires quantifying natural potential habitat conditions to diagnose habitat change and evaluate restoration potential. We used three general methods of quantifying natural potential: historical maps and survey notes, contemporary reference sites, and models. Historical information was available only for the floodplain habitat analysis. We used contemporary reference sites to estimate natural potential habitat conditions for wood abundance, riparian shade, main channel length, and side channel length. For fine sediment, temperature, and beaver ponds we relied on models. We estimated a 90% loss of potential beaver pond area, 91% loss of side-channel length, and 92% loss or degradation of floodplain marshes and ponds. Spawning habitat area change due to wood loss ranged from -23% to -68% across subbasins. Other changes in habitat quantity or quality were smaller—either in magnitude or spatial extent—including rearing habitat areas, stream temperature, and accessible stream length. Historical floodplain habitat mapping provided the highest spatial resolution and certainty in locations and amounts of floodplain habitat lost or degraded, whereas use of the contemporary reference information provided less site specificity for wood abundance and side-channel length change. The models for fine sediment levels and beaver pond areas have the lowest reach-specific certainty, whereas the model of temperature change has higher certainty because it is based on a detailed riparian inventory. Despite uncertainties at the reach level, confidence in subbasin-level estimates of habitat change is moderate to high because accuracy increases as data are aggregated over multiple reaches. Our results show that the largest habitat losses were floodplain and beaver pond habitats, but use of these habitat change results in salmon life-cycle models can illustrate how the potential benefits of alternative habitat restoration actions varies among species with differing habitat preferences.

Effect of Indoor Climate and Habitat Change on Museum Insects during COVID-19 Closures

COVID-19 spread globally and, as there was little immunity, quarantine, isolation, and social distancing became widely practiced. As people were restricted to their homes in many countries, public venues, such as museums, galleries, and historic houses, were typically closed. This allowed insect abundance, under changed conditions, to be explored using traps from the Technical Museum, Schönbrunn Palace, Hofburg Museum, and Weltmuseum in Vienna. The trap contents reveal an increase in Lepisma saccharinum, the common silverfish, as well as in the Zygentoma Ctenolepisma longicaudatum and C. calvum at some museums. Other insects such as Tineola bisselliella, Anthrenus verbasci, and Attagenus smirnovi, though found in reasonable numbers, did not increase. Museum interiors were likely a little cooler and drier during lockdown, but this difference is too small to explain the increased silverfish activity. The larger rooms were certainly quieter, which allowed insects freedom to range more widely. Nevertheless, museums did not observe increased damage to collections from the larger numbers. The infestations during the closures suggest a need for low level cleaning and regular inspections, with an initial focus examining those areas frequented by insects in the past.

Molecular Adaptation to Folivory and the Conservation Implications for Madagascar’s Lemurs

The lemurs of Madagascar include numerous species characterized by folivory across several families. Many extant lemuriform folivores exist in sympatry in Madagascar’s remaining forests. These species avoid feeding competition by adopting different dietary strategies within folivory, reflected in behavioral, morphological, and microbiota diversity across species. These conditions make lemurs an ideal study system for understanding adaptation to leaf-eating. Most folivorous lemurs are also highly endangered. The significance of folivory for conservation outlook is complex. Though generalist folivores may be relatively well equipped to survive habitat disturbance, specialist folivores occupying narrow dietary niches may be less resilient. Characterizing the genetic bases of adaptation to folivory across species and lineages can provide insights into their differential physiology and potential to resist habitat change. We recently reported accelerated genetic change in RNASE1, a gene encoding an enzyme (RNase 1) involved in molecular adaptation in mammalian folivores, including various monkeys and sifakas (genus Propithecus; family Indriidae). Here, we sought to assess whether other lemurs, including phylogenetically and ecologically diverse folivores, might show parallel adaptive change in RNASE1 that could underlie a capacity for efficient folivory. We characterized RNASE1 in 21 lemur species representing all five families and members of the three extant folivorous lineages: (1) bamboo lemurs (family Lemuridae), (2) sportive lemurs (family Lepilemuridae), and (3) indriids (family Indriidae). We found pervasive sequence change in RNASE1 across all indriids, a dN/dS value > 3 in this clade, and evidence for shared change in isoelectric point, indicating altered enzymatic function. Sportive and bamboo lemurs, in contrast, showed more modest sequence change. The greater change in indriids may reflect a shared strategy emphasizing complex gut morphology and microbiota to facilitate folivory. This case study illustrates how genetic analysis may reveal differences in functional traits that could influence species’ ecology and, in turn, their resilience to habitat change. Moreover, our results support the body of work demonstrating that not all primate folivores are built the same and reiterate the need to avoid generalizations about dietary guild in considering conservation outlook, particularly in lemurs where such diversity in folivory has probably led to extensive specialization via niche partitioning.

Molecular adaptation to folivory and the conservation implications for Madagascar's lemurs

Folivory evolved independently at least three times over the last 40 million years among Madagascar's lemurs. Many extant lemuriform folivores exist in sympatry in Madagascar's remaining forests. These species avoid feeding competition by adopting different dietary strategies within folivory, reflected in behavioral, morphological, and microbiota diversity across species. These conditions make lemurs an ideal study system for understanding adaptation to leaf-eating. Most folivorous lemurs are also highly endangered. The significance of folivory for conservation outlook is complex. Though generalist folivores may be relatively well equipped to survive habitat disturbance, specialist folivores occupying narrow dietary niches may be less resilient. Characterizing the genetic bases of adaptation to folivory across species and lineages can provide insights into their differential physiology and potential to resist habitat change. We recently reported accelerated genetic change in RNASE1, a gene encoding an enzyme (RNase 1) involved in molecular adaptation in mammalian folivores, including various monkeys and sifakas (genus Propithecus; family Indriidae). Here, we sought to assess whether other lemurs, including phylogenetically and ecologically diverse folivores, might show parallel adaptive change in RNASE1 that could underlie a capacity for efficient folivory. We characterized RNASE1 in 21 lemur species representing all five families and members of the three extant folivorous lineages: 1) bamboo lemurs (family Lemuridae), 2) sportive lemurs (family Lepilemuridae), and 3) indriids (family Indriidae). We found pervasive sequence change in RNASE1 across all indriids, a dN/dS value > 3 in this clade, and evidence for shared change in isoelectric point, indicating altered enzymatic function. Sportive and bamboo lemurs, in contrast, showed more modest sequence change. The greater change in indriids may reflect a shared strategy emphasizing complex gut morphology and microbiota to facilitate folivory. This case study illustrates how genetic analysis may reveal differences in functional traits that could influence species' ecology and, in turn, their resilience to habitat change. Moreover, our results support the contention that not all primate folivores are built the same and highlight the need to avoid generalizations about dietary guild in considering conservation outlook, particularly in lemurs where such diversity in folivory has probably led to extensive specialization via niche partitioning.