Frequent Gene Duplication/Loss Shapes Distinct Evolutionary Patterns of NLR Genes in Arecaceae Species

Nucleotide-binding leucine-rich repeat (NLR) genes play a key role in plant immune responses and have co-evolved with pathogens since the origin of green plants. Comparative genomic studies on the evolution of NLR genes have been carried out in several angiosperm lineages. However, most of these lineages come from the dicot clade. In this study, comparative analysis was performed on NLR genes from five Arecaceae species to trace the dynamic evolutionary pattern of the gene family during species speciation in this monocot lineage. The results showed that NLR genes from the genomes of Elaeis guineensis (262), Phoenix dactylifera (85), Daemonorops jenkinsiana (536), Cocos nucifera (135) and Calamus simplicifolius (399) are highly variable. Frequent domain loss and alien domain integration have occurred to shape the NLR protein structures. Phylogenetic analysis revealed that NLR genes from the five genomes were derived from dozens of ancestral genes. D. jenkinsiana and E. guineensis genomes have experienced “consistent expansion” of the ancestral NLR lineages, whereas a pattern of “first expansion and then contraction” of NLR genes was observed for P. dactylifera, C. nucifera and C. simplicifolius. The results suggest that rapid and dynamic gene content and structure variation have shaped the NLR profiles of Arecaceae species.

Intraspecific and Interspecific Phenotypic Differences Confirm the Absence of Cryptic Speciation in Triatoma sordida (Hemiptera, Triatominae)

Triatoma sordida is an endemic Chagas disease vector in South America, distributed in Brazil, Bolivia, Paraguay, and Uruguay. Chromosomal, molecular, isoenzimatic, and cuticular hydrocarbon pattern studies indicate cryptic speciation in T. sordida. Recently, T. rosai was described from specimens from Argentina initially characterized as T. sordida. Although several authors assume that the speciation process that supports this differentiation in T. sordida is the result of cryptic speciation, further morphological and/or morphometric studies are necessary to prove the application of this evolutionary event, because the only morphological intraspecific comparison performed in T. sordida is based on geometric morphometry and the only interspecific comparison made is between T. rosai and T. sordida from Brazil that evaluated morphological and morphometric differences. Based on this, morphological analyses of thorax and abdomen using Scanning Electron Microscopy and morphometric analyses of the head, thorax, and abdomen among T. sordida from Brazil, Bolivia, and Paraguay, as well as T. rosai, were performed to assess whether the evolutionary process responsible for variations is the cryptic speciation phenomenon. Morphological differences in the thorax and female external genitalia, as well as morphometric differences in the head, thorax, abdomen, pronotum, and scutellum structures, were observed. Based on this, the evolutionary process that supports, so far, these divergences observed for T. sordida populations/T. sordida subcomplex is not cryptic speciation. Moreover, we draw attention to the necessity for morphological/morphometric studies to correctly apply the cryptic species/speciation terms in triatomines.

Supratidal existence drives phenotypic divergence, but not speciation, in tropical rocky-shore snails

The mechanisms underlying the evolutionary adaptation of animals that transcend the ecological barrier separating the intertidal and supratidal zones of rocky shores are poorly understood. Different wetting frequencies in these zones in tropical regions (daily vs. seasonally, respectively) impose different physical stressors, which should drive phenotypic variation and ultimately speciation in the animals that inhabit them. We studied morphological, physiological and genetic variation in a tropical high-shore gastropod that transcends these zones [Echinolittorina malaccana (Philippi, 1847)]. Variation in melanization, shell features and evaporative water loss was linked to regular seawater wetting, frequent activity and feeding, and solar exposure in intertidal snails, and to inactivity and prolonged aestivation in the shade during continuous air exposure in supratidal snails. Despite selective pressure for phenotypic divergence, and reproductive isolation of the populations in either zone, their mitochondrial COI gene sequences confirmed that they represent a single species. Speciation in our study case is probably constrained by the limitation on activity, mating and reproduction of supratidal snails, such that their populations can only be sustained through intertidal pelagic larval recruitment. Comparisons with other studies suggest that supratidal speciation and specialization for life in this zone probably require moderation of the abiotic (desiccative) conditions, to facilitate greater activity and interaction of animals during air exposure.

Speciation Analysis of Trace Arsenic, Mercury, Selenium and Antimony in Environmental and Biological Samples Based on Hyphenated Techniques

In order to obtain a well understanding of the toxicity and ecological effects of trace elements in the environment, it is necessary to determine not only the total amount, but also their existing species. Speciation analysis has become increasingly important in making risk assessments of toxic elements since the toxicity and bioavailability strongly depend on their chemical forms. Effective separation of different species in combination with highly sensitive detectors to quantify these particular species is indispensable to meet this requirement. In this paper, we present the recent progresses on the speciation analysis of trace arsenic, mercury, selenium and antimony in environmental and biological samples with an emphasis on the separation and detection techniques, especially the recent applications of high performance liquid chromatography (HPLC) hyphenated to atomic spectrometry or mass spectrometry.

Genetic diversity in the Alpine flatworm <i>Crenobia alpina</i>

The freshwater flatworm Crenobia alpina (Platyhelminthes, Tricladida, Planariidae) lives almost exclusively in cold springs and crenal streams and possesses only limited dispersal ability. In this study fragments of the COI and 18S rRNA genes were used to estimate genetic divergences among 37 C. alpina populations from the European Alps. Phylogenetic analyses revealed five geographically and genetically distinct groups and at least 10 distinct lineages of C. alpina across the European Alps. Our study suggests that C. alpina represents a complex of numerous cryptic species. Speciation (allopatric and/or sympatric) may have been facilitated by the orogenetic activity of the Alps and the high habitat specificity.

Phenotypic Dimensions of Reproductive Isolation Between Northern and Melissa Blue Butterflies in the Rocky Mountains

Biological diversity results from speciation, which generally involves the splitting of an ancestral species into descendant species due to adaptation to different niches or the evolution of reproductive incompatibilities (Coyne and Orr 2004). The diverse flora and fauna of the world, including the native inhabitants of the Greater Yellowstone Area (GYA), exist as a result of the speciation process. The central role speciation plays in generating biological diversity imbues importance to our understanding of this process. The general importance of a thorough understanding of speciation is amplified because of the current high rates of extinction on the planet. This is because a long term solution to the present extinction crisis will require maintaining the processes that create species (speciation) not simply preventing extinction. However, many central questions regarding speciation remain to be answered. One fundamental question in speciation research is whether diverging species are isolated (i.e., prevented from interbreeding) due to differences in one, a few, or many characters and whether each of these character differences results from different alleles at a few or many genes. For example, speciation and reproductive isolation might involve divergence along multiple phenotypic axes, such as mate preference, habitat use or preference, and phenology (the timing of life-cycle events). Alternatively, isolation could result from differentiation of a single character. I propose to address this question by assessing patterns of variation for a suite of characters across a hybrid zone between two butterfly species. This is possible because patterns of character variation across hybrids zones allow for inferences about reproductive isolation (Barton and Hewitt 1985).

Phenotypic Dimensions of Reproductive Isolation Between Northern and Melissa Blue Butterflies in the Rocky Mountains

Biological diversity results from speciation, which generally involves the splitting of an ancestral species into descendant species due to adaptation to different niches or the evolution of reproductive incompatibilities (Coyne and Orr 2004). The diverse flora and fauna of the world, including the native inhabitants of the Greater Yellowstone Area (GYA), exist as a result of the speciation process. The central role speciation plays in generating biological diversity imbues importance to our understanding of this process. The general importance of a thorough understanding of speciation is amplified because of the current high rates of extinction on the planet. This is because a long term solution to the present extinction crisis will require maintaining the processes that create species (speciation) not simply preventing extinction. However, many central questions regarding speciation remain to be answered. One fundamental question in speciation research is whether diverging species are isolated (i.e., prevented from interbreeding) due to differences in one, a few, or many characters and whether each of these character differences results from different alleles at a few or many genes. For example, speciation and reproductive isolation might involve divergence along multiple phenotypic axes, such as mate preference, habitat use or preference, and phenology (the timing of life-cycle events). Alternatively, isolation could result from differentiation of a single character. I propose to address this question by assessing patterns of variation for a suite of characters across a hybrid zone between two butterfly species. This is possible because patterns of character variation across hybrids zones allow for inferences about reproductive isolation (Barton and Hewitt 1985).