The space flexible arm has the characteristics of large flexibility and size, and external excitation will cause harmful vibration. In this paper, the dynamic response of flexible arms is analyzed, and the vibration control is studied when nonlinear factors are considered. First, the vibration equation is established according to the Hamilton’s principle, and the generalized force is derived by using rod model and beam model, respectively. Then the Runge–Kutta method is used to solve the vibration equation, and the dynamic response is obtained. Finally, the PD and fuzzy control simulations of three arms are established, and the dead zone and saturation nonlinearities are applied in the programs. The numerical results show that the external force causes significant response, and the vibration control method is effective. Besides, in order to achieve vibration control effect, it is necessary to reduce the dead zone nonlinear range.