Metabolically Active Prokaryotic Complex in Grassland and Forests’ Sod-Podzol under Polycyclic Aromatic Hydrocarbon Influence

Molecular genetic techniques (FISH, RT-PCR, and metagenomic analysis) were used to investigate the comparative functional biodiversity in the prokaryotic complex in grassland and forests’ sod-podzol under polycyclic aromatic hydrocarbon influence. The polluted samples showed a decrease in the biomass of the prokaryotic community representatives and a change in the metabolically active dominants–representatives of the Bacteria and Archaea domains compared to the control samples. The suppression of the metabolic activity of prokaryote cells under the influence of PAHs in sod-podzolic soil under meadow vegetation was more pronounced compared to soils under forest vegetation. The representatives of prokaryotes that are sensitive and resistant to the studied PAHs were identified. The representatives of the phylogenetic groups from the bacterial complex resistant to PAH pollution were Proteobacteria (Alphaproteobacteria), Bacteroidetes, Firmicutes, Chloroflexi, and Thaumarhaeota in the archaeal complex. Representatives of the phylum Acidobacteria and Actinobacteria (Streptosporangiales) are noted among those sensitive to PAH contamination. The presence and expression of the functional alkane monooxygenase (alkB) gene were established in all the experimental variants studied. In the plant variants, the number of copies of alkB genes increased by an order of magnitude and the biomass of metabolically active prokaryotic representatives with the functional alkB gene doubled compared to the unpolluted territories. The copy number index of the alkB gene can be used as one of the parameters when characterizing an ecosystem for the presence of PAH pollutants.

Iron Elution from Iron and Steel Slag Using Bacterial Complex Identified from the Seawater

Iron and steel slag (ISS) is a byproduct of iron refining processes. The lack of iron in seawater can cause barren grounds where algae cannot grow. To improve the barren grounds of the sea, a supply of iron to the seawater is necessary. This study focused on bacteria interacting with ISS and promoting iron elution in seawater. Sulfitobacter sp. (TO1A) and Pseudomonas sp. (TO1B) were isolated from Tokyo Bay and Sagami Bay. The co-culture of both bacteria promoted more iron elution than individual cultures. After the incubation of both bacteria with ISS, quartz and vaterite appeared on the surface of the ISS. To maintain continuous iron elution from the ISS in the seawater, we also isolated Pseudoalteromonas sp. (TO7) that formed a yellow biofilm on the ISS. Iron was eluted by TO1A and TO1B, and biofilm was synthesized by TO7 continuously in the seawater. The present research is expected to contribute to the improvement of ISS usage as a material for the construction of seaweed forests.

Study on the optimal antagonistic effect of a bacterial complex against Monilinia fructicola in peach

Peach brown rot caused by Monilinia fructicola is one of the most economically destructive diseases of peach (Prunus persica L.) in some orchards of China. Biocontrol is a significant strategy that exhibits strong levels of control and ecologically sound concepts in disease management. The purpose of this study was to investigate the combined suppressive effects of three endophytic bacterial strains (xj-14, xj-15, and xj-16) and two soil rhizosphere bacterial strains (xj-A and xj-C) that were shown to have strong inhibitory activity toward M. fructicola in our previous study. The optimal strains and the optimized combination of strains were determined. The combination of strains xj-15 and xj-C inhibited M. fructicola more intensively for a longer period of time. Following the application of 1 × 109 CFU/mL bacterial complex to the fruits, leaves, and shoots of peach trees infected with M. fructicola, the rate of inhibition reached 73.80%, 83.33%, and 90.43%, respectively. A pot experiment using lettuce (Lactuca sativa) showed that inoculation with the bacterial complex significantly increased the growth of seedlings. In this study, some compound bacteria were more effective than those in previous study in suppressing disease and promoting growth, which have the potential to be further applied in the field.

The ability of Lactobacillus rhamnosus to bind patulin and its application in apple juice

The purpose of this study was to evaluate the ability of Lactobacillus rhamnosus to bind patulin (PAT) in the buffer solution and apple juice. The binding of L. rhamnosus to PAT was reversible, which improved the stability of the bacterial complex. The ability to bind PAT can be enhanced with the inactivation of the strain by high temperature and acid treatment. Acid-treated bacteria had the highest PAT binding rate of 72.73±1.05%. The binding rates of acid and high temperature (121 °C) treatments were increased by 21.37% and 19.15%, respectively. L. rhamnosus showed the best detoxification ability to PAT at 37 °C, where the binding rate reached 50.9±1.03%. When the dose of inactivated bacteria powder was 0.02 g ml−1, the minimum concentration of PAT in apple juice was 0.37 µg ml−1. The addition of the L. rhamnosus inactivated powder did not affect the quality of the juice product and effectively bound the PAT in apple juice.

PhotorhabdusDam methyltransferase overexpression impairs virulence of the nemato-bacterial complex in insects

Photorhabdus luminescensis an entomopathogenic bacterium found in symbiosis with the nematodeHeterorhabditis. Dam DNA methylation is involved in the pathogenicity of many bacteria, includingP. luminescens,whereas studies about the role of bacterial DNA methylation during symbiosis are scarce. The aim of this study was to determine the role of Dam DNA methylation inP. luminescenssymbiosis withH. bacteriophora. We constructed a strain overexpressingdamby inserting an additional copy of thedamgene under the control of a constitutive promoter in the chromosome ofP. luminescensand then achieved association between this recombinant strain and nematodes. Thedamoverexpressing strain was able to feed the nematodein vitroandin vivosimilarly as a control strain, and to re-associate with Infective Juvenile (IJ) stages in the insect. No difference in the amount of emerging IJs from the cadaver was observed between the two strains. Compared to the nematode in symbiosis with the control strain, a significant increase in LT50was observed during insect infestation with the nematode associated with thedamoverexpressing strain. These results suggest that theP. luminescensDam plays a role in the pathogenicity of the nemato-bacterial complex.

The structure of bacterial communities of some species of the genus Solidago L.

The abundance and taxonomic structure of the epiphytic bacterial communities of three species of the genus Solidago (Solidago virgaurea L., Solidago canadensis L., Solidago gigantea Aiton) from natural habitats was determined. It was established that in goldenrod during vegetation period, the number of bacteria of the epiphytic complex on leaves and roots increases by 1–2 orders of magnitude, in the soil under the studied plants, the density and taxonomic structure of the bacterial complex did not change much. In all the periods of sampling on the leaves of 3 species of goldenrod, among the epiphytic bacteria of the phyllosphere, pigmented forms of proteobacteria dominated, no replacement of eccisotrophic proteobacteria with bacteria of the hydrolytic complex was recorded. In inflorescences and seeds in Solidago canadensis and Solidago gigantea, the pigmented forms of proteobacteria were also dominant, their share was 60–100%, while in inflorescences of S. virgaurea they were in minor quantities, and apigmented forms of proteobacteria dominated.