Differential sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

Marine turtles represent an ancient lineage of marine vertebrates that evolved from terrestrial ancestors over 100 MYA, yet the genomic basis of the unique physiological and ecological traits enabling these species to thrive in diverse marine habitats remain largely unknown. Additionally, many populations have declined drastically due to anthropogenic activities over the past two centuries, and their recovery is a high global conservation priority. We generated and analyzed high-quality reference genomes for green (Chelonia mydas) and leatherback (Dermochelys coriacea) turtles, representing the two extant marine turtle families (MRCA ~60 MYA). Generally, these genomes are highly syntenic and homologous. Non-collinearity was associated with higher copy numbers of immune, zinc-finger, or olfactory receptor (OR) genes in green turtles. Gene family analyses suggested that ORs related to waterborne odorants have expanded in green turtles and contracted in leatherbacks, which may underlie immunological and sensory adaptations assisting navigation and occupancy of neritic versus pelagic environments, and diet specialization. Microchromosomes showed reduced collinearity, and greater gene content, heterozygosity, and genetic distances between species, supporting their critical role in vertebrate evolutionary adaptation. Finally, demographic history and diversity analyses showed stark contrasts between species, indicating that leatherback turtles have had a low yet stable effective population size, extremely low diversity when compared to other reptiles, and a higher proportion of deleterious variants, reinforcing concern over the persistence of this species under future climate scenarios. These highly contiguous genomes provide invaluable resources for advancing our understanding of evolution and conservation best practices in an imperiled vertebrate lineage.

Ecological Vulnerability of Adult Female Marine Turtles as Indicators of Opportunities for Regional Socioecosystem Management in the Southern Gulf of Mexico

Planning for marine ecosystems management demands spatially explicit information about structural and functional components, in a tradeoff between including the most taxa and keeping it functional. Sentinel, umbrella, and surrogate taxa are strategic for developing indexes that account for other associated species and contribute to a sustainable administration of our seas. Marine turtles feature the former species descriptions, and the knowledge on their ecology contributes to design conservation and restoration strategies in regions they occupy, such as the Gulf of Mexico. Several administrative tools exist to govern marine territories for biodiversity conservation, and assessing how these tools interact with the ecological vulnerability of endangered species is crucial for improving public policies. We assessed the spatial interactions among ecological sensitivity, vulnerability, and the potential impacts on four marine turtle species in the southern Gulf of Mexico and northwestern Caribbean Sea with territorial management tools (natural protected areas, marine priority sites, and ecoregions). A small percentage of the most vulnerable areas is inside natural protected areas, while marine priority sites include a higher percentage. We identified spatial covering gaps that need to be addressed to ensure the conservation and recovery of these endangered species in the Gulf of Mexico and proposed key regions for maximizing territorial conservation.

Regional Ranking of Marine Turtle Nesting in Remote Western Australia by Integrating Traditional Ecological Knowledge and Remote Sensing

Western Australia’s remote Kimberley coastline spans multiple Traditional Owner estates. Marine turtle nesting distribution and abundance in Indigenous Protected Areas and newly declared Marine Parks were assessed by aerial photogrammetry surveys for the Austral summer and winter nesting seasons. Images of nesting tracks were quantified in the lab and verified by ad hoc ground patrols. The rankings of log-scaled plots of track abundance and density give guidance to regional co-management planning. Spatial and temporal differences were detected in that remoter islands had higher nesting usage and few terrestrial predators. The surveys found year-round green turtle nesting peaking in summer, as well as spatial boundaries to the summer and winter flatback stocks. Summer surveys recorded 126.2 island activities per km and 17.7 mainland activities per km. Winter surveys recorded 65.3 island activities per km and quantified a known winter mainland rookery with 888 tracks/km. The three highest density rookeries were found to be winter flatback turtles at Cape Domett, summer green turtles at the Lacepede Islands and summer flatback turtles at Eighty Mile Beach. Moderate to lesser density nesting by summer green turtles and winter flatback turtles occurred in the North Kimberley offshore islands. Traditional Ecological Knowledge and ground-based surveys verified the harder-to-detect species (olive ridley or hawksbill turtles) with irregular nesting, low track persistence and non-aggregated nesting. Higher-density rookeries may provide locations for long-term monitoring using repeated aerial or ground surveys; however, the sparse or infrequently nesting species require insights gleaned by Tradition Ecological Knowledge. Common and conspicuous nesters are easily detected and ranked, but better-informed co-management requires additional ground surveys or surveys timed with the reproductive peaks of rarer species.

Effect of nest relocation on the reproductive success of the marine turtle Lepidochelys olivacea (Testudinata: Cheloniidae)

Resumen. Introducción: Para incrementar el número de crías de tortugas marinas, es necesario mejorar estrategias de conservación, como incubación de nidos, en condiciones de vivero que contrarresten los efectos de las condiciones climáticas extremas. Objetivo: Comparar cinco parámetros de éxito reproductivo (éxito de eclosión, huevos sin desarrollo, crías muertas, mortalidad embrionaria y período de incubación) de la tortuga marina Lepidochelys olivacea. Métodos: Se evaluó la incubación de nidos bajo dos períodos de relocación de nidos (P1 y P2) bajo condiciones de vivero, en el año 2018 en Guerrero, México. Resultados: Se encontraron diferencias significativas en el éxito de eclosión y la mortalidad embrionaria entre los períodos de reubicación de nidos (P <0.001). En P1, se observaron valores más bajos de éxito de eclosión (77.0 % P1 vs 88.6 % P2) y valores más altos de mortalidad embrionaria (13.7 % P1 vs 3.3 % P2) comparados con los de P2. No se encontraron diferencias entre periodos respecto a los parámetros de huevos sin desarrollo, crías muertas y período de incubación. Conclusiones: las diferencias entre las condiciones ambientales más extremas o calurosas durante el primer período de relocación de nidos parecen afectar el éxito de eclosión y mortalidad embrionaria de L. olivacea. Por lo tanto, es importante tomar medidas al respecto durante esta etapa de incubación.

A Systematic Review of Acoustic Telemetry as a Tool to Gain Insights Into Marine Turtle Ecology and Aid Their Conservation

While widely applied in fisheries science, acoustic telemetry remains an underutilized method in the field of marine turtle biotelemetry. However, with the ability to provide fine-scale spatial data (tens to hundreds of meters, depending on array setup and receiver range) at a low cost, acoustic telemetry presents an important tool for obtaining key information on marine turtle ecology. We present a comprehensive and systematic review acknowledging how acoustic telemetry has been used to advance the field of marine turtle ecology and conservation. We identify the extent of current studies and discuss common and novel research approaches while addressing specific limitations of acoustic telemetry. Forty-eight studies were reviewed, representing six of the seven marine turtle species and all life stages, with most individuals identified as juveniles (45%) and hatchlings (36%). Most studies (83%) focused on the spatial distribution of marine turtles, including estimating home ranges, investigating drivers of habitat use, and identifying horizontal movement patterns and vertical space use. Additionally, acoustic telemetry has been used to study hatchling dispersal and marine turtle exposure and response to threats, as well as to monitor physiological parameters. We identified that acoustic telemetry directly or indirectly informs 60% of the top questions and research priorities related to marine turtles identified by experts in the field. With an increase in acoustic telemetry receiver networks and collaborations across taxa, the applicability of acoustic telemetry is growing, not only for marine turtles but for a wide array of marine species. Although there are limitations that need to be considered at a site/project-level, acoustic telemetry is an important, low-cost technology able to address key questions related to marine turtle ecology that can aid in their conservation, and therefore should be considered by researchers as they develop their projects.

Transcending marine turtles: first report of hatching failure in eggs of Amazonian freshwater turtles with symptoms of the fungal emerging disease fusariosis

In the last decades fungal pathogens are causing devastating population declines across a broad range of taxa. A newly emerging fungal disease, sea turtle egg fusariosis, caused by members of the Fusarium solani species complex (FSSC), has been reported to be responsible for hatching failure in sea turtles around the world. However, this has not been reported in other non-marine turtle species. Herein we report high hatching failure from eggs symptomatic of fusariosis in the yellow-spotted Amazon river turtle ( Podocnemis unifilis), inhabiting a pristine environment in the Ecuadorian Amazon. We assessed hatching success from eggs symptomatic and asymptomatic of fusariosis ( n = 680 eggs), tested for Fusarium infection by PCR amplifying the TEF-1α gene (n= 68 turtle internal egg swab samples) and sequenced eight amplicons for screening of FSSC membership on an Illumina Miseq. Hatchability was 72% for asymptomatic eggs, whilst only 8% of symptomatic eggs hatched. Eight percent of asymptomatic and 58% of symptomatic eggs tested positive for Fusarium spp. and sequencing revealed that nine sequence variants from three asymptomatic and four symptomatic eggs corresponded to F. keratoplasticum, F. solani and F. falciforme, the three major FSSC pathogens already reported in sea turtle egg fusariosis. Our study therefore suggests that observed hatching failure of eggs showing symptoms of fusariosis is at least partially caused by Fusarium pathogens within FSSC in a freshwater turtle. This report highlights that fusariosis is more widespread among the Testudines order than previously reported and is not limited to sea environments, which is of particular conservation concern.