The alkaloid berberine is useful as a mobile apoplastic tracer. It is readily precipitated by thiocyanate, forming bright yellow, needle-like, fluorescent crystals. When berberine hemisulphate and potassium thiocyanate are applied sequentially to plant tissue, the crystals form in unmodified walls and in the lumina of dead cells such as tracheary elements. Lignified and suberized walls stain with berberine but do not develop crystals. Regions of the plant that have been penetrated by the chemicals can be located by preparing freehand sections, mounting them in potassium thiocyanate to inhibit dissolution of the crystals, and examining them with a fluorescence microscope. When the two chemicals are sequentially introduced into the xylem of onion, corn, and broad bean roots, the tracer does not pass the endodermal Casparian band, indicating that the system traces apoplastic pathways. The chemical concentrations that produce sufficient crystals so that berberine can be used as an apoplastic tracer in primary roots are 0.05% berberine hemisulphate and 0.09 M potasium thiocyanate. These concentrations were not toxic to cells of onion bulb epidermis. They reduced the growth rates of corn and broad bean roots but did not kill them. Berberine–thiocyanate is a useful apoplastic tracer provided care is taken not to exceed the limits of berberine toxicity to the tissue. Key words: apoplastic tracer, berberine hemisulphate, potassium thiocyanate, roots, toxicity tests, corn, onion, broad bean.