The Phyloware Project: A Software Framework for Phylogenomic Virtue

Author(s):  
Daniel N. Frank ◽  
Charles E. Robertson
Keyword(s):  
Author(s):  
Da-Yin Liao

Contemporary 300mm semiconductor manufacturing systems have highly automated and digitalized cyber-physical integration. They suffer from the profound problems of integrating large, centralized legacy systems with small islands of automation. With the recent advances in disruptive technologies, semiconductor manufacturing has faced dramatic pressures to reengineer its automation and computer integrated systems. This paper proposes a Distributed-Ledger, Edge-Computing Architecture (DLECA) for automation and computer integration in semiconductor manufacturing. Based on distributed ledger and edge computing technologies, DLECA establishes a decentralized software framework where manufacturing data are stored in distributed ledgers and processed locally by executing smart contracts at the edge nodes. We adopt an important topic of automation and computer integration for semiconductor research &development (R&D) operations as the study vehicle to illustrate the operational structure and functionality, applications, and feasibility of the proposed DLECA software framework.


2009 ◽  
Vol 29 (9) ◽  
pp. 2541-2545
Author(s):  
Wen HAO ◽  
Ling-mei AI ◽  
Ying-hui WANG

Author(s):  
Jordan Musser ◽  
Ann S Almgren ◽  
William D Fullmer ◽  
Oscar Antepara ◽  
John B Bell ◽  
...  

MFIX-Exa is a computational fluid dynamics–discrete element model (CFD-DEM) code designed to run efficiently on current and next-generation supercomputing architectures. MFIX-Exa combines the CFD-DEM expertise embodied in the MFIX code—which was developed at NETL and is used widely in academia and industry—with the modern software framework, AMReX, developed at LBNL. The fundamental physics models follow those of the original MFIX, but the combination of new algorithmic approaches and a new software infrastructure will enable MFIX-Exa to leverage future exascale machines to optimize the modeling and design of multiphase chemical reactors.


ACS Omega ◽  
2020 ◽  
Vol 5 (49) ◽  
pp. 31608-31623
Author(s):  
Samuel D. Lotz ◽  
Alex Dickson

Semantic Web ◽  
2021 ◽  
pp. 1-16
Author(s):  
Esko Ikkala ◽  
Eero Hyvönen ◽  
Heikki Rantala ◽  
Mikko Koho

This paper presents a new software framework, Sampo-UI, for developing user interfaces for semantic portals. The goal is to provide the end-user with multiple application perspectives to Linked Data knowledge graphs, and a two-step usage cycle based on faceted search combined with ready-to-use tooling for data analysis. For the software developer, the Sampo-UI framework makes it possible to create highly customizable, user-friendly, and responsive user interfaces using current state-of-the-art JavaScript libraries and data from SPARQL endpoints, while saving substantial coding effort. Sampo-UI is published on GitHub under the open MIT License and has been utilized in several internal and external projects. The framework has been used thus far in creating six published and five forth-coming portals, mostly related to the Cultural Heritage domain, that have had tens of thousands of end-users on the Web.


2019 ◽  
Vol 214 ◽  
pp. 05010 ◽  
Author(s):  
Giulio Eulisse ◽  
Piotr Konopka ◽  
Mikolaj Krzewicki ◽  
Matthias Richter ◽  
David Rohr ◽  
...  

ALICE is one of the four major LHC experiments at CERN. When the accelerator enters the Run 3 data-taking period, starting in 2021, ALICE expects almost 100 times more Pb-Pb central collisions than now, resulting in a large increase of data throughput. In order to cope with this new challenge, the collaboration had to extensively rethink the whole data processing chain, with a tighter integration between Online and Offline computing worlds. Such a system, code-named ALICE O2, is being developed in collaboration with the FAIR experiments at GSI. It is based on the ALFA framework which provides a generalized implementation of the ALICE High Level Trigger approach, designed around distributed software entities coordinating and communicating via message passing. We will highlight our efforts to integrate ALFA within the ALICE O2 environment. We analyze the challenges arising from the different running environments for production and development, and conclude on requirements for a flexible and modular software framework. In particular we will present the ALICE O2 Data Processing Layer which deals with ALICE specific requirements in terms of Data Model. The main goal is to reduce the complexity of development of algorithms and managing a distributed system, and by that leading to a significant simplification for the large majority of the ALICE users.


Author(s):  
Damien Rompapas ◽  
Charlton Rodda ◽  
Bryan Christopher Brown ◽  
Noah Benjamin Zerkin ◽  
Alvaro Cassinelli

2011 ◽  
Vol 20 (06) ◽  
pp. 1127-1156 ◽  
Author(s):  
MAXIM DAVIDOVSKY ◽  
VADIM ERMOLAYEV ◽  
VYACHESLAV TOLOK

Ontology instance migration is one of the complex and not fully solved problems in knowledge management. A solution is required when the ontology schema evolves in the life cycle and the assertions have to be transferred to the newer version. The problem may become more complex in distributed settings when, for example, several autonomous software entities use and exchange partial assertional knowledge in a domain that is formalized by different though semantically overlapping descriptive theories. Such an exchange is essentially the migration of the assertional part of an ontology to other ontologies belonging to or used by different entities. The paper presents our method and tool for migrating instances between the ontologies that have structurally different but semantically overlapping schemas. The approach is based on the use of the manually coded transformation rules describing the changes between the input and the output ontologies. The tool is implemented as a plug-in for the ProjectNavigator prototype software framework. The article also reports the results of our three evaluation experiments. In these experiments we evaluated the degree of complexity in the structural changes to which our approach remains valid. We also chose the ontology sets in one of the experiments to make the results comparable with the ontology alignment software. Finally we checked how well our approach scales with the increase of the quantity of the migrated ontology instances to the numbers that are characteristic to industrial ontologies. In our opinion the evaluation results are satisfactory and suggest some directions for the future work.


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