scholarly journals Towards a Digital Diatom: Image Processing and Deep Learning Analysis of Bacillaria paradoxa Dynamic Morphology

2021 ◽  
pp. 223-248
Author(s):  
Bradly Alicea ◽  
Richard Gordon ◽  
Thomas Harbich ◽  
Ujjwal Singh ◽  
Asmit Singh ◽  
...  
2019 ◽  
Vol 5 (suppl) ◽  
pp. 27-27
Author(s):  
Xiaohua Liu

27 Background: The prevalence of lung cancer has been increased markedly in worldwide range with growing clinical significance, the quantitative and qualitative analysis on lung nodules has proven to be important for the early-detection of lung cancer as well as its treatment in clinical practice. However, lung lesion screening performed by radiologists can be very time-consuming and its accuracy varies depending on doctor’s individual experiences. In this study, we aim to build up a robust CAD system that automatically detects the lesion locations and quantitatively characterizes the detected lesions on CT images. Methods: Specifically, we employed the deep learning analysis for lesion detection in patients and performed image processing techniques to generate quantitative morphology features for assisting lesion diagnosis . The data collected includes 3956 lung CT series (slice thickness≤3mm) with multiple lung nodules from 15 Class-A hospitals in China , 1155 lung CT scan from Luna16 dataset as well as CT scans from Kaggle dataset (Data Science Bowl 2017). Lung nodule annotation was then performed by two experienced radiologists and further assessed by four senior associate chief physicians. The obtained CT images were randomly selected and split to construct training, validation and test dataset. After preprocessing, a pre-trained ResNet18 framework is transferred to develop a robust detection system to detect the possible lung lesion locations with corresponding probabilities. Results: The resulting detection system yields FROC of 0.4663, recall of 82.46%, precision of 36.06% for 5~30mm nodules. Each detected lesion was labeled by its bounding box and was then analyzed through image processing algorithm to generate diagnostic assisting features, including longest diameter, shortest diameter, volume, largest cross section area as well as its density type (calcify, solid, partial solid, and ground-glass opacity). Conclusions: The proposed CAD system offers a fast and convenient approach for assisting the diagnosis of lung nodule pathologies, and it is beneficial to relate our research to the current framework of lung cancer diagnosis.


2020 ◽  
Author(s):  
Wei Zhang ◽  
Zixing Huang ◽  
Jian Zhao ◽  
Du He ◽  
Mou Li ◽  
...  

Author(s):  
Yukun WANG ◽  
Yuji SUGIHARA ◽  
Xianting ZHAO ◽  
Haruki NAKASHIMA ◽  
Osama ELJAMAL

2021 ◽  
Vol 26 (1) ◽  
pp. 200-215
Author(s):  
Muhammad Alam ◽  
Jian-Feng Wang ◽  
Cong Guangpei ◽  
LV Yunrong ◽  
Yuanfang Chen

AbstractIn recent years, the success of deep learning in natural scene image processing boosted its application in the analysis of remote sensing images. In this paper, we applied Convolutional Neural Networks (CNN) on the semantic segmentation of remote sensing images. We improve the Encoder- Decoder CNN structure SegNet with index pooling and U-net to make them suitable for multi-targets semantic segmentation of remote sensing images. The results show that these two models have their own advantages and disadvantages on the segmentation of different objects. In addition, we propose an integrated algorithm that integrates these two models. Experimental results show that the presented integrated algorithm can exploite the advantages of both the models for multi-target segmentation and achieve a better segmentation compared to these two models.


Sensors ◽  
2021 ◽  
Vol 21 (9) ◽  
pp. 3068
Author(s):  
Soumaya Dghim ◽  
Carlos M. Travieso-González ◽  
Radim Burget

The use of image processing tools, machine learning, and deep learning approaches has become very useful and robust in recent years. This paper introduces the detection of the Nosema disease, which is considered to be one of the most economically significant diseases today. This work shows a solution for recognizing and identifying Nosema cells between the other existing objects in the microscopic image. Two main strategies are examined. The first strategy uses image processing tools to extract the most valuable information and features from the dataset of microscopic images. Then, machine learning methods are applied, such as a neural network (ANN) and support vector machine (SVM) for detecting and classifying the Nosema disease cells. The second strategy explores deep learning and transfers learning. Several approaches were examined, including a convolutional neural network (CNN) classifier and several methods of transfer learning (AlexNet, VGG-16 and VGG-19), which were fine-tuned and applied to the object sub-images in order to identify the Nosema images from the other object images. The best accuracy was reached by the VGG-16 pre-trained neural network with 96.25%.


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