scholarly journals Roles of Amphipathicity and Hydrophobicity in the Micelle-Driven Structural Switch of a 14-mer Peptide Core from a Choline-Binding Repeat

2018 ◽  
Vol 24 (22) ◽  
pp. 5825-5839 ◽  
Author(s):  
Héctor Zamora-Carreras ◽  
Beatriz Maestro ◽  
Erik Strandberg ◽  
Anne S. Ulrich ◽  
Jesús M. Sanz ◽  
...  
Keyword(s):  
1990 ◽  
Vol 18 (5) ◽  
pp. 810-812 ◽  
Author(s):  
RICHARD L. STEVENS ◽  
CHRISTOPHER F. NICODEMUS ◽  
SHALOM AVRAHAM

1991 ◽  
Vol 278 (2) ◽  
pp. 375-380 ◽  
Author(s):  
T L Kirley

The Mg(2+)-ATPase present in rabbit skeletal-muscle transverse tubules is an integral membrane enzyme which has been solubilized and purified previously in this laboratory [Kirley (1988) J. Biol. Chem. 263, 12682-12689]. The present study indicates that, in addition to the approx. 100 kDa protein (distinct from the sarcoplasmic-reticulum Ca(2+)-ATPase) seen previously to co-purify with the Mg(2+)-ATPase activity, there are also proteins having molecular masses of 160, 70 and 43 kDa. The 70 and 43 kDa glycosylated proteins (50 and 31 kDa after deglycosylation) are difficult to detect by SDS/PAGE before deglycosylation, owing to the broadness of the bands. Additional purification procedures, cross-linking studies and chemical and enzymic deglycosylation studies were undertaken to determine the structure and relationship of these proteins. Both the 97 and 160 kDa proteins were demonstrated to be N-glycosylated at multiple sites, the 97 kDa protein being reduced to a peptide core of 84 kDa and the 160 kDa protein to a peptide core of 131 kDa after deglycosylation. Although the Mg(2+)-ATPase activity is resistant to a number of chemical modification reagents, cross-linking inactivates the enzyme at low concentrations. This inactivation is accompanied by cross-linking of two 97 kDa molecules to one another, suggesting that the 97 kDa protein is involved in ATP hydrolysis. The existence of several proteins along with the inhibition of ATPase activity by cross-linking is consistent with the interpretation of the susceptibility of this enzyme to inactivation by most detergents as being due to the disruption of a protein complex of associated subunits by the inactivating detergents. The 160 kDa glycoprotein can be partially resolved from the Mg(2+)-ATPase activity, and is identified by its N-terminal amino acid sequence as angiotensin-converting enzyme.


2020 ◽  
Vol 22 (23) ◽  
pp. 12909-12917
Author(s):  
Aleksandar R. Milosavljević ◽  
Kari Jänkälä ◽  
Miloš Lj. Ranković ◽  
Francis Canon ◽  
John Bozek ◽  
...  

X-ray spectroscopy of an isolated controllably hydrated peptide: core excitation of the first solvation shell enhances peptide backbone fragmentation.


2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Julia Y. Rho ◽  
Henry Cox ◽  
Edward D. H. Mansfield ◽  
Sean H. Ellacott ◽  
Raoul Peltier ◽  
...  

Abstract Self-assembling peptides have the ability to spontaneously aggregate into large ordered structures. The reversibility of the peptide hydrogen bonded supramolecular assembly make them tunable to a host of different applications, although it leaves them highly dynamic and prone to disassembly at the low concentration needed for biological applications. Here we demonstrate that a secondary hydrophobic interaction, near the peptide core, can stabilise the highly dynamic peptide bonds, without losing the vital solubility of the systems in aqueous conditions. This hierarchical self-assembly process can be used to stabilise a range of different β-sheet hydrogen bonded architectures.


2012 ◽  
Vol 84 (9) ◽  
pp. 1919-1930 ◽  
Author(s):  
Adriana Pietropaolo

A formalism to quantify the chemical stereoselectivity, based on free energy of binding calculations, is here discussed. It is used to explain the stereoselectivity of two diastereoisomeric frameworks, comprising the dimer of a copper(II)-peptide core of L- and D-carnosine, respectively, each bound to two chains of D-trehalose, in which copper(II) adopts a type-II coordination geometry. The stereocenter of carnosine is varied both L and D, giving rise to two diastereoisomers. A thermodynamic cycle crossing the formation of the two enantiomeric copper(II) peptide cores was devised. A harmonic restraining potential that depends only on the bond distance was added to ensure reversibility in bond formation and dissociation, for an accurate estimate of the free energy. The calculation of the free energy of binding between D-trehalose and the two enantiomeric copper(II) peptide cores reproduces the free-energy quantities observed from stability constants and isothermal titration calorimetry (ITC) measurements. This is an example of chirality selection based on free-energy difference.


2012 ◽  
Vol 65 (1) ◽  
pp. 35 ◽  
Author(s):  
Mariusz Skwarczynski ◽  
Bibi Hamideh Parhiz ◽  
Fatemeh Soltani ◽  
Saranya Srinivasan ◽  
Khairul A. Kamaruzaman ◽  
...  

Traditional vaccine approaches for Group A streptococcus (GAS) infection are inadequate owing to the host’s production of cross-reactive antibodies that recognize not only the bacteria but also human tissue. To overcome this problem a peptide subunit-based vaccine was proposed, which would incorporate only minimal non-cross reactive epitopes. However, special delivery systems/adjuvants were required because short peptides are not immunogenic. In this study we have incorporated two epitopes from two different GAS proteins into a lipid core peptide (LCP) self-adjuvanting delivery system to achieve better protection against a wide range of GAS serotypes. Multivalent and monovalent constructs were synthesized with the help of an azide alkyne cycloaddition (click) reaction and their ability to self-assemble under aqueous conditions was examined. The compounds significantly differed in their ability to form small size nanoparticles, which are believed to be most appropriate for peptide-based subunit vaccine delivery. The LCP conjugates possessing two different epitopes, in contrast to monoepitopic constructs, formed small nanoparticles (5–15 nm) presumably owing to a suitable hydrophilic-hydrophobic balance of the molecules.


Author(s):  
Q. Bone ◽  
C. Carré ◽  
P. Chang

This review discusses the structure and operation of the fine mesh ‘mucous’ feeding filters of tunicates. The function of the endostyle in producing the feeding filter and the different ways in which the filter is deployed are also described.The fine structure of the filter includes new data, and the ultrastructural dimensions of the filter mesh and filament thickness are tabulated for the different tunicate groups. Histochemical data suggest that a peptide core is surrounded by a mucopolysaccharide sheath, and endostyle gland cell histochemistry and ultrastructure indicates protein synthesis. The construction of the filter by the endostyle was first considered in ascidians, and has been updated by observations on the simpler endostyle in salps, where there is evidence that secretions of gland cells pass to the bases of a fence of cilia, there to fuse and pass off the ciliary tips as fine filaments composing the filter net. Although all filters that have been examined when deployed have a rectangular mesh, reasons are given for supposing that when formed in the endostyle they have a square mesh in which both longitudinal and transverse filaments are of similar thickness and that the transverse filaments are stretched as the filter is deployed, so becoming thinner.Finally, some ecological consequences of the filter parameters in the different tunicate groups are considered.


2006 ◽  
Vol 70 (3) ◽  
pp. 936-946 ◽  
Author(s):  
Birgitte Holst ◽  
Manja Lang ◽  
Erik Brandt ◽  
Anders Bach ◽  
Andrew Howard ◽  
...  

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