Label‐free optical projection tomography for quantitative three‐dimensional anatomy of mouse embryo

2019 ◽  
Vol 12 (7) ◽  
Author(s):  
Sungbea Ban ◽  
Nam Hyun Cho ◽  
Eunjung Min ◽  
Jung Kweon Bae ◽  
Yujin Ahn ◽  
...  
2011 ◽  
Vol 16 (10) ◽  
pp. 100502 ◽  
Author(s):  
Andrea Bassi ◽  
Luca Fieramonti ◽  
Cosimo D’Andrea ◽  
Marina Mione ◽  
Gianluca Valentini

Micromachines ◽  
2020 ◽  
Vol 11 (3) ◽  
pp. 293
Author(s):  
Wenhao Du ◽  
Cheng Fei ◽  
Junliang Liu ◽  
Yongfu Li ◽  
Zhaojun Liu ◽  
...  

Optical projection tomography (OPT) is the direct optical equivalent of X-ray computed tomography (CT). To obtain a larger depth of field, traditional OPT usually decreases the numerical aperture (NA) of the objective lens to decrease the resolution of the image. So, there is a trade-off between sample size and resolution. Commercial microfluidic systems can observe a sample in flow mode. In this paper, an OPT instrument is constructed to observe samples. The OPT instrument is combined with commercial microfluidic systems to obtain a three-dimensional and time (3D + T)/four-dimensional (4D) video of the sample. “Focal plane scanning” is also used to increase the images’ depth of field. A series of two-dimensional (2D) images in different focal planes was observed and compared with images simulated using our program. Our work dynamically monitors 3D OPT images. Commercial microfluidic systems simulate blood flow, which has potential application in blood monitoring and intelligent drug delivery platforms. We design an OPT adaptor to perform OPT on a commercial wide-field inverted microscope (Olympusix81). Images in different focal planes are observed and analyzed. Using a commercial microfluidic system, a video is also acquired to record motion pictures of samples at different flow rates. To our knowledge, this is the first time an OPT setup has been combined with a microfluidic system.


2015 ◽  
Vol 30 (2) ◽  
pp. 532-542 ◽  
Author(s):  
Eivind Grong ◽  
Bård Kulseng ◽  
Ingerid Brænne Arbo ◽  
Christoffer Nord ◽  
Maria Eriksson ◽  
...  

2009 ◽  
Author(s):  
Qin Miao ◽  
Benjamin Hawthorne ◽  
Michael Meyer ◽  
J. Richard Rahn ◽  
Thomas Neumann ◽  
...  

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Pedro P. Vallejo Ramirez ◽  
Joseph Zammit ◽  
Oliver Vanderpoorten ◽  
Fergus Riche ◽  
Francois-Xavier Blé ◽  
...  

Abstract The three-dimensional imaging of mesoscopic samples with Optical Projection Tomography (OPT) has become a powerful tool for biomedical phenotyping studies. OPT uses visible light to visualize the 3D morphology of large transparent samples. To enable a wider application of OPT, we present OptiJ, a low-cost, fully open-source OPT system capable of imaging large transparent specimens up to 13 mm tall and 8 mm deep with 50 µm resolution. OptiJ is based on off-the-shelf, easy-to-assemble optical components and an ImageJ plugin library for OPT data reconstruction. The software includes novel correction routines for uneven illumination and sample jitter in addition to CPU/GPU accelerated reconstruction for large datasets. We demonstrate the use of OptiJ to image and reconstruct cleared lung lobes from adult mice. We provide a detailed set of instructions to set up and use the OptiJ framework. Our hardware and software design are modular and easy to implement, allowing for further open microscopy developments for imaging large organ samples.


2009 ◽  
Vol 14 (6) ◽  
pp. 064035 ◽  
Author(s):  
Qin Miao ◽  
J. Richard Rahn ◽  
Anna Tourovskaia ◽  
Michael G. Meyer ◽  
Thomas Neumann ◽  
...  

2017 ◽  
Author(s):  
Daniele Ancora ◽  
Diego Di Battista ◽  
Georgia Giasafaki ◽  
Stylianos Psycharakis ◽  
Evangelos Liapis ◽  
...  

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