scholarly journals Deep learning: step forward to high‐resolution in vivo shortwave infrared imaging

Author(s):  
Vladimir A. Baulin ◽  
Yves Usson ◽  
Xavier Le Guével
2021 ◽  
Author(s):  
Vladimir A. Baulin ◽  
Yves Usson ◽  
Xavier Le Guével

AbstractIn vivo optical imaging is a fast growing field that offers great perspectives for biomedical applications. In particular, imaging in the shortwave infrared window (SWIR: 1000-1700 nm) represents major improvement compared to the NIR-I region (700-900 nm) in terms of temporal and spatial resolutions in depths down to 4 mm. SWIR is a fast and cheap alternative to more precise methods such as X-ray and opto-acoustic imaging. Main obstacles in SWIR imaging are the noise and scattering from tissues and skin that reduce the precision of the method. We demonstrate the combination of SWIR in vivo imaging in the NIR-IIb region (1500-1700 nm) with advanced deep learning image analysis allows to overcome these obstacles and making a large step forward to high resolution imaging: it allows to precisely segment vessels from tissues and noise, provides morphological structure of the vessels network, with learned pseudo-3D shape, their relative position, dynamic information of blood vascularization in depth in small animals and distinguish the vessels types: artieries and veins. For demonstration we use neural the network IterNet that exploits structural redundancy of the blood vessels (L. Li, et.al., The IEEE WACV, 2020), which provides a useful analysis tool for raw SWIR images.


2018 ◽  
Author(s):  
Wei Chen ◽  
ChiAn Cheng ◽  
Emily Cosco ◽  
Shyam Ramakrishnan ◽  
Jakob Lingg ◽  
...  

Tissue is translucent to shortwave infrared (SWIR) light, rendering optical imaging superior in this region. However, the widespread use of optical SWIR imaging has been limited, in part, by the lack of bright, biocompatible contrast agents that absorb and emit light above 1000 nm. J-aggregation offers a means to transform stable, near-infrared (NIR) fluorophores into red-shifted SWIR contrast agents. Here we demonstrate that hollow mesoporous silica nanoparticles (HMSNs) can template the J-aggregation of NIR fluorophore IR-140 to result in nanomaterials that absorb and emit SWIR light. The J-aggregates inside PEGylated HMSNs are stable for multiple weeks in buffer and enable high resolution imaging <i>in vivo</i>with 980 nm excitation.


Author(s):  
Xavier Le Guevel ◽  
Benjamin Musnier ◽  
Karl D. Wegner ◽  
Maxime Henry ◽  
Agnes Desroches-Castan ◽  
...  

2020 ◽  
Vol 118 (1) ◽  
pp. e2021446118
Author(s):  
Zhuoran Ma ◽  
Feifei Wang ◽  
Weizhi Wang ◽  
Yeteng Zhong ◽  
Hongjie Dai

Detecting fluorescence in the second near-infrared window (NIR-II) up to ∼1,700 nm has emerged as a novel in vivo imaging modality with high spatial and temporal resolution through millimeter tissue depths. Imaging in the NIR-IIb window (1,500–1,700 nm) is the most effective one-photon approach to suppressing light scattering and maximizing imaging penetration depth, but relies on nanoparticle probes such as PbS/CdS containing toxic elements. On the other hand, imaging the NIR-I (700–1,000 nm) or NIR-IIa window (1,000–1,300 nm) can be done using biocompatible small-molecule fluorescent probes including US Food and Drug Administration-approved dyes such as indocyanine green (ICG), but has a caveat of suboptimal imaging quality due to light scattering. It is highly desired to achieve the performance of NIR-IIb imaging using molecular probes approved for human use. Here, we trained artificial neural networks to transform a fluorescence image in the shorter-wavelength NIR window of 900–1,300 nm (NIR-I/IIa) to an image resembling an NIR-IIb image. With deep-learning translation, in vivo lymph node imaging with ICG achieved an unprecedented signal-to-background ratio of >100. Using preclinical fluorophores such as IRDye-800, translation of ∼900-nm NIR molecular imaging of PD-L1 or EGFR greatly enhanced tumor-to-normal tissue ratio up to ∼20 from ∼5 and improved tumor margin localization. Further, deep learning greatly improved in vivo noninvasive NIR-II light-sheet microscopy (LSM) in resolution and signal/background. NIR imaging equipped with deep learning could facilitate basic biomedical research and empower clinical diagnostics and imaging-guided surgery in the clinic.


2021 ◽  
Author(s):  
Xinyu Ye ◽  
Peipei Wang ◽  
Sisi Li ◽  
Jieying Zhang ◽  
Yuan Lian ◽  
...  

AbstractSingle-shot echo planer imaging (SS-EPI) is widely used for clinical Diffusion-weighted magnetic resonance imaging (DWI) acquisitions. However, due to the limited bandwidth along the phase encoding direction, the obtained images suffer from distortion and blurring, which limits its clinical value for diagnosis. Here we proposed a deep learning-based image-quality-transfer method with a novel loss function with improved network structure to simultaneously increase the resolution and correct distortions for SS-EPI. We proposed a modified network structure based on Generative Adversarial Networks (GAN). A dense net with gradient map guidance and a multi-level fusion block was employed as the generator to suppress the over-smoothing effect. We also proposed a fractional anisotropy (FA) loss to exploit the intrinsic signal relations in DWI. In-vivo brain DWI data were used to test the proposed method. The results showed that the distortion-corrected high-resolution DWI images with restored anatomical details can be obtained from low-resolution SS-EPI images by taking the advantage of high-resolution anatomical images. Additionally, the proposed FA loss can improve the image quality and quantitative accuracy of diffusion metrics by utilizing the intrinsic relations among different diffusion directions.


Sensors ◽  
2018 ◽  
Vol 18 (8) ◽  
pp. 2587 ◽  
Author(s):  
Xudong Zhang ◽  
Chunlai Li ◽  
Qingpeng Meng ◽  
Shijie Liu ◽  
Yue Zhang ◽  
...  

Super resolution methods alleviate the high cost and high difficulty in applying high resolution infrared image sensors. In this paper we present a novel single image super resolution method for infrared images by combining compressive sensing theory and deep learning. Low resolution images can be regarded as the compressed sampling results of the high resolution ones in compressive sensing. With sparsity in this theory, higher resolution images can be reconstructed. However, because of diverse level of sparsity for different images, the output contains noise and loss of high frequency information. Deep convolutional neural network provides a solution to relieve the noise and supplement some missing high frequency information. By concatenating two methods, we manage to produce better results in super resolution tasks for infrared images than SRCNN and ScSR. PSNR and SSIM values are used to quantify the performance. Applying our method to open datasets and actual infrared imaging experiments, we also find better visual results are preserved.


ACS Nano ◽  
2020 ◽  
Vol 14 (4) ◽  
pp. 4973-4981 ◽  
Author(s):  
Zhixi Yu ◽  
Benjamin Musnier ◽  
K. David Wegner ◽  
Maxime Henry ◽  
Benoit Chovelon ◽  
...  

2017 ◽  
Vol 16 (13) ◽  
pp. 1-10 ◽  
Author(s):  
Morteza Sadeghi ◽  
Wenyi Sheng ◽  
Ebrahim Babaeian ◽  
Markus Tuller ◽  
Scott B. Jones

Author(s):  
Wei Chen ◽  
ChiAn Cheng ◽  
Emily Cosco ◽  
Shyam Ramakrishnan ◽  
Jakob Lingg ◽  
...  

Tissue is translucent to shortwave infrared (SWIR) light, rendering optical imaging superior in this region. However, the widespread use of optical SWIR imaging has been limited, in part, by the lack of bright, biocompatible contrast agents that absorb and emit light above 1000 nm. J-aggregation offers a means to transform stable, near-infrared (NIR) fluorophores into red-shifted SWIR contrast agents. Here we demonstrate that hollow mesoporous silica nanoparticles (HMSNs) can template the J-aggregation of NIR fluorophore IR-140 to result in nanomaterials that absorb and emit SWIR light. The J-aggregates inside PEGylated HMSNs are stable for multiple weeks in buffer and enable high resolution imaging <i>in vivo</i>with 980 nm excitation.


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