scholarly journals PeptideDepot: Flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information

PROTEOMICS ◽  
2009 ◽  
Vol 9 (23) ◽  
pp. 5350-5358 ◽  
Author(s):  
Kebing Yu ◽  
Arthur R. Salomon
2018 ◽  
Vol 4 (1) ◽  
pp. 57-63
Author(s):  
Anatoliy Yuferov

The article considers the issues of converting the ENDF format systems of constants to relational databases. This conversion can become one of the tools facilitating the development and operation of factual information, techniques and algorithms in the field of nuclear data and, therefore, increasing the efficiency of the corresponding computational codes. The work briefly examines an infological model of ENDF libraries. The possible structure of tables of the corresponding relational database is described. The proposed database schema and the form of tables take into account the presence of both single and multiple properties of the isotopes under consideration. Consideration is given to the difference in organizational requirements for transferring constants from relational tables to programs and performing a visual analysis of data in tables by a physicist-evaluator. The conversion algorithms and results are described for the ROSFOND-A and ENDF/B-VII.1 libraries. It is shown that performing calculations directly in the DBMS environment has its advantages in terms of simplifying programming and eliminating the need to solve a number of problems on data verification and validation. Possible approaches are indicated to ensure operation of inherited software together with nuclear data libraries in the relational format. Some terminological refinements are proposed to facilitate constructing an infological model for ENDF format. The conversion programs and the ENDF/B-VII.1 library in the relational format are available on a public site.


2007 ◽  
Vol 23 (13) ◽  
pp. 1705-1707 ◽  
Author(s):  
Bobbie-Jo M. Webb-Robertson ◽  
Elena S. Peterson ◽  
Mudita Singhal ◽  
Kyle R. Klicker ◽  
Christopher S. Oehmen ◽  
...  

2019 ◽  
Vol 50 (4) ◽  
pp. 693-702 ◽  
Author(s):  
Christine Holyfield ◽  
Sydney Brooks ◽  
Allison Schluterman

Purpose Augmentative and alternative communication (AAC) is an intervention approach that can promote communication and language in children with multiple disabilities who are beginning communicators. While a wide range of AAC technologies are available, little is known about the comparative effects of specific technology options. Given that engagement can be low for beginning communicators with multiple disabilities, the current study provides initial information about the comparative effects of 2 AAC technology options—high-tech visual scene displays (VSDs) and low-tech isolated picture symbols—on engagement. Method Three elementary-age beginning communicators with multiple disabilities participated. The study used a single-subject, alternating treatment design with each technology serving as a condition. Participants interacted with their school speech-language pathologists using each of the 2 technologies across 5 sessions in a block randomized order. Results According to visual analysis and nonoverlap of all pairs calculations, all 3 participants demonstrated more engagement with the high-tech VSDs than the low-tech isolated picture symbols as measured by their seconds of gaze toward each technology option. Despite the difference in engagement observed, there was no clear difference across the 2 conditions in engagement toward the communication partner or use of the AAC. Conclusions Clinicians can consider measuring engagement when evaluating AAC technology options for children with multiple disabilities and should consider evaluating high-tech VSDs as 1 technology option for them. Future research must explore the extent to which differences in engagement to particular AAC technologies result in differences in communication and language learning over time as might be expected.


2019 ◽  
Vol 62 (9) ◽  
pp. 3397-3412
Author(s):  
Michelle I. Brown ◽  
David Trembath ◽  
Marleen F. Westerveld ◽  
Gail T. Gillon

Purpose This pilot study explored the effectiveness of an early storybook reading (ESR) intervention for parents with babies with hearing loss (HL) for improving (a) parents' book selection skills, (b) parent–child eye contact, and (c) parent–child turn-taking. Advancing research into ESR, this study examined whether the benefits from an ESR intervention reported for babies without HL were also observed in babies with HL. Method Four mother–baby dyads participated in a multiple baseline single-case experimental design across behaviors. Treatment effects for parents' book selection skills, parent–child eye contact, and parent–child turn-taking were examined using visual analysis and Tau-U analysis. Results Statistically significant increases, with large to very large effect sizes, were observed for all 4 participants for parent–child eye contact and parent–child turn-taking. Limited improvements with ceiling effects were observed for parents' book selection skills. Conclusion The findings provide preliminary evidence for the effectiveness of an ESR intervention for babies with HL for promoting parent–child interactions through eye contact and turn-taking.


2013 ◽  
Vol 3 (1) ◽  
pp. 29-50 ◽  
Author(s):  
Evinç Doğan ◽  
Ibrahim Sirkeci

This study examines the ways in which the city image of Istanbul is re-created through the mega-events within the context of the European Capital of Culture (ECoC) 2010. Istanbul “took the stage” as one of the three ECoC cities (Essen for the Ruhr in Germany and Pécs in Hungary), where the urban spaces were projected as the theatre décor while residents and visitors became the spectators of the events. Organisers and agents of the ECoC 2010 seemed to rebrand Istanbul as a “world city” rather than a “European capital”. With a series of transnational connotations, this can be considered as part of an attempt to turn Istanbul to a global city. In this study we examine posters used during the ECoC 2010 to see whether this was evident in the promoted images of Istanbul. The research employs a hermeneutic approach in which representations, signs and language are the means of symbolic meaning, which is analysed through qualitative methods for the visual data (Visual Analysis Methods), namely Semiotics and Discourse Analysis. The analysed research material comes from a sample of posters released during the ECoC 2010 to promote 549 events throughout the year. Using stratified random sampling we have drawn 28 posters (5% of the total) reflecting the thematic groups of events in the ECoC 2010. Particular attention is also paid to the reflexivity of the researchers and researchers’ embeddedness to the object of research. The symbolic production and visual representation are therefore investigated firstly through the authoritative and historically constituted discourses in the making of Istanbul image and secondly through the orders of cultural consumption and mediatisation of culture through spectacular events. Hence enforcing a transnationalisation of the image of the city where the image appears to be almost stateless transcending the national boundaries. Findings and methodology used in this study can be useful in understanding similar cases and further research into the processes of city and place branding and image relationships. 


1996 ◽  
Vol 8 (3) ◽  
pp. 160-168 ◽  
Author(s):  
Janet Burt ◽  
Tom Beaumont James

This article discusses the different approaches to the treatment of historical databases: the relational database system and κλειω, a source-oriented approach.


2016 ◽  
Vol 2016 (1) ◽  
pp. 1-11
Author(s):  
BradE. Hollister ◽  
Alex Pang
Keyword(s):  

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