Mining quorum sensing regulated proteins - Role of bacterial cell-to-cell communication in global gene regulation as assessed by proteomics

PROTEOMICS ◽  
2011 ◽  
Vol 11 (15) ◽  
pp. 3070-3085 ◽  
Author(s):  
Leo Eberl ◽  
Katharina Riedel
PLoS ONE ◽  
2014 ◽  
Vol 9 (4) ◽  
pp. e93587 ◽  
Author(s):  
Eun-Ji Hong ◽  
Joon-Song Park ◽  
Younhee Kim ◽  
Heung-Shick Lee

2017 ◽  
Vol 83 (22) ◽  
Author(s):  
Brett L. Mellbye ◽  
Eva Spieck ◽  
Peter J. Bottomley ◽  
Luis A. Sayavedra-Soto

ABSTRACT The genomes of many bacteria that participate in nitrogen cycling through the process of nitrification contain putative genes associated with acyl-homoserine lactone (AHL) quorum sensing (QS). AHL QS or bacterial cell-cell signaling is a method of bacterial communication and gene regulation and may be involved in nitrogen oxide fluxes or other important phenotypes in nitrifying bacteria. Here, we carried out a broad survey of AHL production in nitrifying bacteria in three steps. First, we analyzed the evolutionary history of AHL synthase and AHL receptor homologs in sequenced genomes and metagenomes of nitrifying bacteria to identify AHL synthase homologs in ammonia-oxidizing bacteria (AOB) of the genus Nitrosospira and nitrite-oxidizing bacteria (NOB) of the genera Nitrococcus, Nitrobacter, and Nitrospira. Next, we screened cultures of both AOB and NOB with uncharacterized AHL synthase genes and AHL synthase-negative nitrifiers by a bioassay. Our results suggest that an AHL synthase gene is required for, but does not guarantee, cell density-dependent AHL production under the conditions tested. Finally, we utilized mass spectrometry to identify the AHLs produced by the AOB Nitrosospira multiformis and Nitrosospira briensis and the NOB Nitrobacter vulgaris and Nitrospira moscoviensis as N-decanoyl-l-homoserine lactone (C10-HSL), N-3-hydroxy-tetradecanoyl-l-homoserine lactone (3-OH-C14-HSL), a monounsaturated AHL (C10:1-HSL), and N-octanoyl-l-homoserine lactone (C8-HSL), respectively. Our survey expands the list of AHL-producing nitrifiers to include a representative of Nitrospira lineage II and suggests that AHL production is widespread in nitrifying bacteria. IMPORTANCE Nitrification, the aerobic oxidation of ammonia to nitrate via nitrite by nitrifying microorganisms, plays an important role in environmental nitrogen cycling from agricultural fertilization to wastewater treatment. The genomes of many nitrifying bacteria contain genes associated with bacterial cell-cell signaling or quorum sensing (QS). QS is a method of bacterial communication and gene regulation that is well studied in bacterial pathogens, but less is known about QS in environmental systems. Our previous work suggested that QS might be involved in the regulation of nitrogen oxide gas production during nitrite metabolism. This study characterized putative QS signals produced by different genera and species of nitrifiers. Our work lays the foundation for future experiments investigating communication between nitrifying bacteria, the purpose of QS in these microorganisms, and the manipulation of QS during nitrification.


2012 ◽  
Vol 78 (16) ◽  
pp. 5473-5482 ◽  
Author(s):  
Panagiotis N. Skandamis ◽  
George-John E. Nychas

ABSTRACTFood spoilage may be defined as a process that renders a product undesirable or unacceptable for consumption and is the outcome of the biochemical activity of a microbial community that eventually dominates according to the prevailing ecological determinants. Although limited information are reported, this activity has been attributed to quorum sensing (QS). Consequently, the potential role of cell-to-cell communication in food spoilage and food safety should be more extensively elucidated. Such information would be helpful in designing approaches for manipulating these communication systems, thereby reducing or preventing, for instance, spoilage reactions or even controlling the expression of virulence factors. Due to the many reports in the literature on the fundamental features of QS, e.g., chemistry and definitions of QS compounds, in this minireview, we only allude to the types and chemistry of QS signaling moleculesper seand to the (bioassay-based) methods of their detection and quantification, avoiding extensive documentation. Conversely, we attempt to provide insights into (i) the role of QS in food spoilage, (ii) the factors that may quench the activity of QS in foods and review the potential QS inhibitors that might “mislead” the bacterial coordination of spoilage activities and thus may be used as biopreservatives, and (iii) the future experimental approaches that need to be undertaken in order to explore the “gray” or “black” areas of QS, increase our understanding of how QS affects microbial behavior in foods, and assist in finding answers as to how we can exploit QS for the benefit of food preservation and food safety.


2020 ◽  
Vol 6 (2) ◽  
pp. 81 ◽  
Author(s):  
Paulami Chatterjee ◽  
Gabriele Sass ◽  
Wieslaw Swietnicki ◽  
David A. Stevens

Pseudomonas aeruginosa is one of the most prominent opportunistic bacteria in airways of cystic fibrosis patients and in immunocompromised patients. These bacteria share the same polymicrobial niche with other microbes, such as the opportunistic fungus Aspergillus fumigatus. Their inter-kingdom interactions and diverse exchange of secreted metabolites are responsible for how they both fare in competition for ecological niches. The outcomes of their contests likely determine persistent damage and degeneration of lung function. With a myriad of virulence factors and metabolites of promising antifungal activity, P. aeruginosa products or their derivatives may prove useful in prophylaxis and therapy against A. fumigatus. Quorum sensing underlies the primary virulence strategy of P. aeruginosa, which serves as cell–cell communication and ultimately leads to the production of multiple virulence factors. Understanding the quorum-sensing-related pathogenic mechanisms of P. aeruginosa is a first step for understanding intermicrobial competition. In this review, we provide a basic overview of some of the central virulence factors of P. aeruginosa that are regulated by quorum-sensing response pathways and briefly discuss the hitherto known antifungal properties of these virulence factors. This review also addresses the role of the bacterial secretion machinery regarding virulence factor secretion and maintenance of cell–cell communication.


2017 ◽  
Author(s):  
Sarangam Majumdar ◽  
Sisir Roy

Bacteria within biofilms can coordinate their behavior through distinct from of communication mechanism1. The well-established cell - to - cell signaling process in bacteria is known as quorum sensing through chemical signaling molecules2-5. Recently, another cell- to - cell communication process based on ion channel mediated electrical signaling6 has also been observed. In this article, we propose a novel approach to explain the role of coherence and phase synchronization in the cell – to – cell bacterial communication. The observable long – range coherent electrical signaling is species independent and it is caused by membrane – potential - dependent modulation of tumbling frequency7-9. Moreover, noise can play a constructive role in enhancing the synchronization of chaotic bacterial communication systems and noise associated with the opening and closing the gate of ion channel induce small kinetic viscosity that make a wave-like pattern in concentration profile of quorum sensing.


Author(s):  
Michael Givskov ◽  
Thomas Bovbjerg Rasmussen ◽  
Dacheng Ren ◽  
Naomi Balaban

2016 ◽  
Author(s):  
Celina Vila-Sanjurjo ◽  
Christoph Engwer ◽  
Xiaofei Qin ◽  
Lea Hembach ◽  
Tania Verdía-Cotelo ◽  
...  

Quorum sensing (QS) explains a type of bacterial cell-cell communication mediated by exocellular compounds that act as autoinducers (AIs). As such, QS can be considered the most primordial form of language. QS has profound implications for the control of many important traits (e.g.biofilm formation, secretion of virulence factors, etc.). Conceptually, the QS response can be split into its “listening” and “speaking” components,i.e.the power to sense AI levelsvs.the ability to synthesize and release these molecules. By explaining the cell-density dependence of QS behavior as the consequence of the system’s arrival to a threshold AI concentration, models of QS have traditionally assumed a salient role for the “QS speaking” module during bacterial cell-to-cell communication. In this paper, we have provided evidence that challenges this AI-centered view of QS and establishes LuxR-like activators at the center of QS. Our observation that highly coordinated, cell-density dependent responses can occur in the absence of AI production, implies that the ability to launch such responses is engrained within the “QS listening” module. Our data indicates that once a critical threshold of intracellular activator monomers in complex with AI is reached, a highly orchestrated QS response ensues. While displaying a clear cell-density dependence, such response does not strictly require the sensing of population levels by individual cells. We additionally show, bothin vivoandin silico, that despite their synchronous nature, QS responses do not require that all the cells in the population participate in the response. Central to our analysis was the discovery that percolation theory (PT) can be used to mathematically describe QS responses. While groundbreaking, our results are in agreement with and integrate the latest conclusions reached in the field. We explain for the first time, the cell-density-dependent synchronicity of QS responses as the function of a single protein, the LuxR-like activator, capable of coordinating the temporal response of a population of cells in the absence of cell-to-cell communication. Being QS the most primordial form of speech, our results have important implications for the evolution of language in its ancient chemical form.Abbreviations3Dthree dimensionalacwthreshold intracellular concentration of activator moleculesAHLacyl-homoserine lactoneAHLfischN-(3-oxohexanoyl)-L-homoserine lactoneAHLviolN-hexanoyl-DL-homoserine-lactoneAIautoinducera.uarbitrary unitsBMBbromophenol blueCAtrans-cinnamaldehydeFlfluorescence intensityFI/OD600density-normalized fluorescence intensityGFPgreen fluorescent proteinMwmolecular weightPTpercolation theoryQSquorum sensingtcpercolation critical timewtwild type


2009 ◽  
Vol 55 (3) ◽  
pp. 361-377 ◽  
Author(s):  
Andrei P. Pomerantsev ◽  
Olga M. Pomerantseva ◽  
Andrew S. Camp ◽  
Radhika Mukkamala ◽  
Stanley Goldman ◽  
...  

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