scholarly journals Unravelling consensus genomic regions conferring leaf rust resistance in wheat via meta‐QTL analysis

2021 ◽  
Author(s):  
Aduragbemi Amo ◽  
Jose Miguel Soriano
Keyword(s):  
Leaf Rust ◽  
Qtl Analysis ◽  
Rust Resistance ◽  
Leaf Rust Resistance ◽  
Genomic Regions

scholarly journals Unravelling consensus genomic regions conferring leaf rust resistance in wheat via meta-QTL analysis

2021 ◽  
Author(s):  
Amo Aduragbemi ◽  
Jose Miguel Soriano
Keyword(s):  
Leaf Rust ◽  
Qtl Analysis ◽  
Rust Resistance ◽  
Puccinia Triticina ◽  
Leaf Rust Resistance ◽  
Snp Markers ◽  
Resistant Varieties ◽  
Bibliographic Search ◽  
Using Data ◽  
Genomic Regions

Leaf rust, caused by the fungus Puccinia triticina Erikss (Pt), is a destructive disease affecting wheat and a threat to food security. Developing resistant varieties represents a useful method of disease control, and thus, understanding the genetic basis for leaf rust resistance is required. To this end, a comprehensive bibliographic search for leaf rust resistance quantitative trait loci (QTLs) was performed, and 393 QTLs were collected from 50 QTL mapping studies. Afterwards, a consensus map with a total length of 4567 cM consisting of different types of markers (SSR, DArT, Chip-based SNP markers and SNP markers from GBS) was used for QTL projection, and meta-QTL analysis was performed on 320 QTLs. A total of 75 genetic map positions (gmQTLs) were discovered and refined to 15 high confidence mQTLs (hcmQTLs). The candidate genes discovered within the hcmQTL interval were then checked for differential expression using data from three transcriptome studies, resulting in 92 differentially expressed genes (DEGs). The expression of these genes in various leaf tissues during wheat development was explored. This study provides insight into leaf rust resistance in wheat and thereby provides an avenue for developing resistant varieties by incorporating the most important hcmQTLs.

scholarly journals Unravelling Consensus Genomic Regions Conferring Leaf Rust Resistance in Wheat via Meta-QTL Analysis

2021 ◽  
Author(s):  
Aduragbemi Amo ◽  
Jose Miguel Soriano
Keyword(s):  
Leaf Rust ◽  
Qtl Analysis ◽  
Rust Resistance ◽  
Puccinia Triticina ◽  
Leaf Rust Resistance ◽  
Snp Markers ◽  
Resistant Varieties ◽  
Bibliographic Search ◽  
Using Data ◽  
Genomic Regions

Abstract Leaf rust, caused by the fungus Puccinia triticina Erikss (Pt), is a destructive disease affecting wheat and a threat to food security. Developing resistant varieties represents a useful method of disease control, and thus, understanding the genetic basis for leaf rust resistance is required. To this end, a comprehensive bibliographic search for leaf rust resistance quantitative trait loci (QTLs) was performed, and 393 QTLs were collected from 50 QTL mapping studies. Afterwards, a consensus map with a total length of 4567 cM consisting of different types of markers (SSR, DArT, Chip-based SNP markers and SNP markers from GBS) was used for QTL projection, and meta-QTL analysis was performed on 320 QTLs. A total of 75 genetic map positions (gmQTLs) were discovered and refined to 15 high confidence mQTLs (hcmQTLs). The candidate genes discovered within the hcmQTL interval were then checked for differential expression using data from three transcriptome studies, resulting in 92 differentially expressed genes (DEGs). The expression of these genes in various leaf tissues during wheat development was explored. This study provides insight into leaf rust resistance in wheat and thereby provides an avenue for developing resistant varieties by incorporating the most important hcmQTLs.

Comparative mapping of the two wheat leaf rust resistance loci Lr1 and Lr10 in rice and barley

Genome ◽  
1998 ◽  
Vol 41 (3) ◽  
pp. 328-336 ◽  
Author(s):  
Francesca Gallego ◽  
Catherine Feuillet ◽  
Monika Messmer ◽  
Anja Penger ◽  
Andreas Graner ◽  
...  
Keyword(s):  
Leaf Rust ◽  
Comparative Mapping ◽  
Rust Resistance ◽  
Repetitive Sequences ◽  
Rice Chromosome ◽  
Leaf Rust Resistance ◽  
Chromosome 1 ◽  
Wheat Leaf Rust ◽  
Wheat Leaf ◽  
Genomic Regions

The wheat genome is large, hexaploid, and contains a high amount of repetitive sequences. In order to isolate agronomically important genes from wheat by map-based cloning, a simpler model of the genome must be used for identifying candidate genes. The objective of this study was to comparatively map the genomic regions of two wheat leaf rust disease resistance loci, Lr1 and Lr10, in the putative model genomes of rice and barley. Two probes cosegregating with the Lr1 gene on chromosome 5DL of wheat were studied. The rice sequences corresponding to the two probes were isolated and mapped. The two probes mapped to two different rice chromosomes, indicating that the organization of the region orthologous to Lr1 is different in rice and wheat. In contrast, synteny was conserved between wheat and barley in this chromosomal region. The Lrk10 gene cosegregated with Lr10 on chromosome 1AS in wheat. The rice gene corresponding to Lrk10 was mapped on rice chromosome 1, where it occurred in many copies. This region on rice chromosome 1 corresponds to the distal part of the group 3S chromosomes in Triticeae. The synteny is conserved between rice chromosome 1 and the Triticeae group 3S chromosomes up to the telomere of the chromosomes. On group 3S chromosomes, we found a gene that is partially homologous to Lrk10. We conclude that in the genomic regions studied, there is limited and only partially useful synteny between wheat and rice. Therefore, barley should also be considered as a model genome for isolating the Lr1 and Lr10 genes from wheat.Key words: barley, comparative mapping, leaf rust, resistance genes, rice, synteny, wheat.

Lr80: A new and widely effective source of leaf rust resistance of wheat for enhancing diversity of resistance among modern cultivars

2021 ◽  
Author(s):  
Subodh Kumar ◽  
Subhash C. Bhardwaj ◽  
Om P. Gangwar ◽  
Akanksha Sharma ◽  
Naeela Qureshi ◽  
...  
Keyword(s):  
Leaf Rust ◽  
Rust Resistance ◽  
Leaf Rust Resistance ◽  
Effective Source

scholarly journals Map-Based Cloning of Leaf Rust Resistance Gene Lr21 From the Large and Polyploid Genome of Bread Wheat

Genetics ◽  
2003 ◽  
Vol 164 (2) ◽  
pp. 655-664 ◽  
Author(s):  
Li Huang ◽  
Steven A Brooks ◽  
Wanlong Li ◽  
John P Fellers ◽  
Harold N Trick ◽  
...  
Keyword(s):  
Amino Acid ◽  
Leaf Rust ◽  
Resistance Gene ◽  
Bread Wheat ◽  
Rust Resistance ◽  
Agronomic Traits ◽  
Leaf Rust Resistance ◽  
Triticum Aestivum L ◽  
Rust Resistance Gene ◽  
Leaf Rust Resistance Gene

Abstract We report the map-based cloning of the leaf rust resistance gene Lr21, previously mapped to a generich region at the distal end of chromosome arm 1DS of bread wheat (Triticum aestivum L.). Molecular cloning of Lr21 was facilitated by diploid/polyploid shuttle mapping strategy. Cloning of Lr21 was confirmed by genetic transformation and by a stably inherited resistance phenotype in transgenic plants. Lr21 spans 4318 bp and encodes a 1080-amino-acid protein containing a conserved nucleotide-binding site (NBS) domain, 13 imperfect leucine-rich repeats (LRRs), and a unique 151-amino-acid sequence missing from known NBS-LRR proteins at the N terminus. Fine-structure genetic analysis at the Lr21 locus detected a noncrossover (recombination without exchange of flanking markers) within a 1415-bp region resulting from either a gene conversion tract of at least 191 bp or a double crossover. The successful map-based cloning approach as demonstrated here now opens the door for cloning of many crop-specific agronomic traits located in the gene-rich regions of bread wheat.

scholarly journals Identification of leaf rust resistance genes Lr34 and Lr46 in common wheat (Triticum aestivum L. ssp. aestivum) lines of different origin using multiplex PCR

2021 ◽  
Vol 16 (1) ◽  
pp. 172-183
Author(s):  
Agnieszka Tomkowiak ◽  
Roksana Skowrońska ◽  
Michał Kwiatek ◽  
Julia Spychała ◽  
Dorota Weigt ◽  
...  
Keyword(s):  
Multiplex Pcr ◽  
Leaf Rust ◽  
Common Wheat ◽  
Fungal Pathogens ◽  
Rust Resistance ◽  
Leaf Rust Resistance ◽  
Field Conditions ◽  
Pcr Marker ◽  
Specific Sequence ◽  
Cereal Species

Abstract Leaf rust caused by the fungus Puccinia recondita f. sp. tritici is one of the most dangerous diseases of common wheat. Infections caused by fungal pathogens reduce the quantity and quality of yields of many cereal species. The most effective method to limit plant infection is to use cultivars that show rust resistance. Genetically conditioned horizontal-type resistance (racial-nonspecific) is a desirable trait because it is characterized by more stable expression compared to major (R) genes that induce racially specific resistance, often overcome by pathogens. Horizontal resistance is conditioned by the presence of slow rust genes, which include genes Lr34 and Lr46. This study aimed to identify markers linked to both genes in 64 common wheat lines and to develop multiplex PCR reaction conditions that were applied to identify both genes simultaneously. The degree of infestation of the analyzed lines was also assessed in field conditions during the growing season of 2017 and 2018. Simple sequence repeat anchored-polymerase chain reaction (SSR-PCR) marker csLV was identified during analysis in line PHR 4947. The presence of a specific sequence has also been confirmed in multiplex PCR analyses. In addition to gene Lr34, gene Lr46 was identified in this genotype. Lines PHR 4947 and PHR 4819 were characterized by the highest leaf rust resistance in field conditions. During STS-PCR analyses, the marker wmc44 of gene Lr46 was identified in most of the analyzed lines. This marker was not present in the following genotypes: PHR 4670, PHR 4800, PHR 4859, PHR 4907, PHR 4922, PHR 4949, PHR 4957, PHR 4995, and PHR 4997. The presence of a specific sequence has also been confirmed in multiplex PCR analyses. Genotypes carrying the markers of the analyzed gene showed good resistance to leaf rust in field conditions in both 2017 and 2018. Research has demonstrated that marker assisted selection (MAS) and multiplex PCR techniques are excellent tools for selecting genotypes resistant to leaf rust.

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