Construction of Caffeine-Inducible Gene Switches in Mammalian Cells

Author(s):  
Daniel Bojar
2016 ◽  
Vol 42 (3) ◽  
pp. 824-830 ◽  
Author(s):  
Mario L. Fabiilli ◽  
Rahul A. Phanse ◽  
Alexander Moncion ◽  
J. Brian Fowlkes ◽  
Renny T. Franceschi

2018 ◽  
Vol 7 (4) ◽  
pp. 1167-1173 ◽  
Author(s):  
Ian C. Miller ◽  
Marielena Gamboa Castro ◽  
Joe Maenza ◽  
Jason P. Weis ◽  
Gabriel A. Kwong

FEBS Journal ◽  
2006 ◽  
Vol 273 (24) ◽  
pp. 5550-5563 ◽  
Author(s):  
Siva K. Panguluri ◽  
Prasanna Kumar ◽  
Subba R. Palli

Genes ◽  
2018 ◽  
Vol 9 (10) ◽  
pp. 511 ◽  
Author(s):  
Tomoko Takahashi ◽  
Yuko Nakano ◽  
Koji Onomoto ◽  
Mitsutoshi Yoneyama ◽  
Kumiko Ui-Tei

Exogenous double-stranded RNAs (dsRNAs) similar to viral RNAs induce antiviral RNA silencing or RNA interference (RNAi) in plants or invertebrates, whereas interferon (IFN) response is induced through activation of virus sensor proteins including Toll like receptor 3 (TLR3) or retinoic acid-inducible gene I (RIG-I) like receptors (RLRs) in mammalian cells. Both RNA silencing and IFN response are triggered by dsRNAs. However, the relationship between these two pathways has remained unclear. Laboratory of genetics and physiology 2 (LGP2) is one of the RLRs, but its function has remained unclear. Recently, we reported that LGP2 regulates endogenous microRNA-mediated RNA silencing by interacting with an RNA silencing enhancer, TAR-RNA binding protein (TRBP). Here, we investigated the contribution of other RLRs, RIG-I and melanoma-differentiation-associated gene 5 (MDA5), in the regulation of RNA silencing. We found that RIG-I, but not MDA5, also represses short hairpin RNA (shRNA)-induced RNAi by type-I IFN. Our finding suggests that RIG-I, but not MDA5, interacts with TRBP indirectly through LGP2 to function as an RNAi modulator in mammalian cells.


2015 ◽  
Vol 11 (1) ◽  
pp. 71-79 ◽  
Author(s):  
Atze T. Das ◽  
Xue Zhou ◽  
Stefan W. Metz ◽  
Monique A. Vink ◽  
Ben Berkhout

1990 ◽  
Vol 9 ◽  
pp. 46
Author(s):  
Nikki J. Holbrook ◽  
Jennifer D. Luethy ◽  
Jong Sung Park ◽  
Albert J. Fornace ◽  
Joseph Fargnoli

2021 ◽  
Vol 7 (1) ◽  
pp. eabd3568
Author(s):  
Nils Schneider ◽  
Franz-Georg Wieland ◽  
Deqiang Kong ◽  
Alexandra A. M. Fischer ◽  
Maximilian Hörner ◽  
...  

Light-inducible gene switches represent a key strategy for the precise manipulation of cellular events in fundamental and applied research. However, the performance of widely used gene switches is limited due to low tissue penetrance and possible phototoxicity of the light stimulus. To overcome these limitations, we engineer optogenetic synthetic transcription factors to undergo liquid-liquid phase separation in close spatial proximity to promoters. Phase separation of constitutive and optogenetic synthetic transcription factors was achieved by incorporation of intrinsically disordered regions. Supported by a quantitative mathematical model, we demonstrate that engineered transcription factor droplets form at target promoters and increase gene expression up to fivefold. This increase in performance was observed in multiple mammalian cells lines as well as in mice following in situ transfection. The results of this work suggest that the introduction of intrinsically disordered domains is a simple yet effective means to boost synthetic transcription factor activity.


2019 ◽  
Vol 8 (8) ◽  
pp. 1744-1754 ◽  
Author(s):  
Deboki Chakravarti ◽  
Leidy D. Caraballo ◽  
Benjamin H. Weinberg ◽  
Wilson W. Wong

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