Apple Latent Spherical Virus (ALSV) Vector as a Tool for Reverse Genetic Studies and Non-transgenic Breeding of a Variety of Crops

Author(s):  
Ichiro Kasajima ◽  
Makoto Ito ◽  
Noriko Yamagishi ◽  
Nobuyuki Yoshikawa
2010 ◽  
Vol 84 (16) ◽  
pp. 8342-8347 ◽  
Author(s):  
Krishnamurthy Konduru ◽  
Gerardo G. Kaplan

ABSTRACT Hepatitis A virus (HAV), an atypical member of the Picornaviridae, grows poorly in cell culture. To define determinants of HAV growth, we introduced a blasticidin (Bsd) resistance gene into the virus genome and selected variants that grew at high concentrations of Bsd. The mutants grew fast and had increased rates of RNA replication and translation but did not produce significantly higher virus yields. Nucleotide sequence analysis and reverse genetic studies revealed that a T6069G change resulting in a F42L amino acid substitution in the viral polymerase (3Dpol) was required for growth at high Bsd concentrations whereas a silent C7027T mutation enhanced the growth rate. Here, we identified a novel determinant(s) in 3Dpol that controls the kinetics of HAV growth.


2016 ◽  
Vol 07 ◽  
Author(s):  
Usman Aslam ◽  
Hafiza M. N. Cheema ◽  
Sheraz Ahmad ◽  
Iqrar A. Khan ◽  
Waqas Malik ◽  
...  

DNA Repair ◽  
2004 ◽  
Vol 3 (8-9) ◽  
pp. 1175-1185 ◽  
Author(s):  
Mitsuyoshi Yamazoe ◽  
Eiichiro Sonoda ◽  
Helfrid Hochegger ◽  
Shunichi Takeda

2019 ◽  
Vol 375 (1790) ◽  
pp. 20190187 ◽  
Author(s):  
Anna Klucnika ◽  
Hansong Ma

The animal mitochondrial genome, although small, can have a big impact on health and disease. Non-pathogenic sequence variation among mitochondrial DNA (mtDNA) haplotypes influences traits including fertility, healthspan and lifespan, whereas pathogenic mutations are linked to incurable mitochondrial diseases and other complex conditions like ageing, diabetes, cancer and neurodegeneration. However, we know very little about how mtDNA genetic variation contributes to phenotypic differences. Infrequent recombination, the multicopy nature and nucleic acid-impenetrable membranes present significant challenges that hamper our ability to precisely map mtDNA variants responsible for traits, and to genetically modify mtDNA so that we can isolate specific mutants and characterize their biochemical and physiological consequences. Here, we summarize the past struggles and efforts in developing systems to map and edit mtDNA. We also assess the future of performing forward and reverse genetic studies on animal mitochondrial genomes. This article is part of the theme issue ‘Linking the mitochondrial genotype to phenotype: a complex endeavour’.


Author(s):  
Alison Mills ◽  
Venkateswari Jaganatha ◽  
Alejandro Cortez ◽  
Michael Guzman ◽  
James M. Burnette ◽  
...  

Gene-editing tools such as CRISPR-Cas9 have created unprecedented opportunities for genetic studies in plants and animals. We designed a course-based undergraduate research experience (CURE) to train introductory biology students in the concepts and implementation of gene-editing technology as well as develop their soft skills in data management and scientific communication.


Planta ◽  
2018 ◽  
Vol 248 (6) ◽  
pp. 1431-1441 ◽  
Author(s):  
Kazuki Kamada ◽  
Shino Omata ◽  
Noriko Yamagishi ◽  
Ichiro Kasajima ◽  
Nobuyuki Yoshikawa

2008 ◽  
Vol 84 (5) ◽  
pp. 155-165 ◽  
Author(s):  
Kazuto NAKADA ◽  
Akitsugu SATO ◽  
Jun-Ichi HAYASHI

Author(s):  
Jean-Pierre Bouchard ◽  
François Gagné ◽  
Fernando M. S. Tomé ◽  
Denis Brunet

ABSTRACT:Seven French-Canadian cases of clearcut oculopharyngeal muscular dystrophy (OPMD) had their muscle studied for the presence of intranuclear inclusions, and they were all positive. Inclusions of both “mature” and “immature” types were seen in our material. The presence of such intranuclear structures should be added to the criteria of the clinical picture and the family history for diagnosis of a case and inclusion of a family in further genetic studies. Reverse genetic studies of large families and biochemical studies of these intranuclear structures may help to understand the pathogenesis of this common disease in Quebec.


Author(s):  
Lavinia Sheets ◽  
Melanie Holmgren ◽  
Katie S Kindt

AbstractOver the last several decades, studies in humans and animal models have successfully identified numerous molecules required for hearing and balance. Many of these studies relied on unbiased forward genetic screens based on behavior or morphology to identify these molecules. Alongside forward genetic screens, reverse genetics has further driven the exploration of candidate molecules. This review provides an overview of the genetic studies that have established zebrafish as a genetic model for hearing and balance research. Further, we discuss how the unique advantages of zebrafish can be leveraged in future genetic studies. We explore strategies to design novel forward genetic screens based on morphological alterations using transgenic lines or behavioral changes following mechanical or acoustic damage. We also outline how recent advances in CRISPR-Cas9 can be applied to perform reverse genetic screens to validate large sequencing datasets. Overall, this review describes how future genetic studies in zebrafish can continue to advance our understanding of inherited and acquired hearing and balance disorders.


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