Structural and Functional Genomic Resources Developed

2018 ◽  
pp. 161-172
Author(s):  
Go Suzuki ◽  
Turgut Yigit Akyol ◽  
Shusei Sato
Keyword(s):  
Functional Genomic ◽  
Genomic Resources

Functional genomic resources for potato

2008 ◽  
Vol 88 (4) ◽  
pp. 573-581 ◽  
Author(s):  
Xiu-Qing Li ◽  
Rebecca Griffiths ◽  
David De Koeyer ◽  
Charlotte Rothwell ◽  
Vicki Gustafson ◽  
...  
Keyword(s):  
Expressed Sequence Tag ◽  
Genetic Maps ◽  
Genomic Research ◽  
Functional Genomic ◽  
Entire Genome ◽  
Future Directions ◽  
Genomic Resources ◽  
Expressed Sequence ◽  
Selection Of ◽  
Made In

Considerable functional genomic resources have been developed by the potato research community in the past decade, including expressed sequence tag (EST) libraries, SAGE libraries, microarrays, molecular-function maps, and mutant populations. This article reviews the types, characteristics, strengths, limitations, and appropriate applications of these resources for genomic research and discusses perspectives on future directions. This wide selection of resources available to potato researchers complements efforts to sequence the entire genome and advances made in the development of saturated genetic maps. Key words: Solanum, potato, genomics, expressed sequence tag, microarray, longSAGE, data mining

scholarly journals AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species

2010 ◽  
Vol 39 (Database) ◽  
pp. D612-D619 ◽  
Author(s):  
C. Aurrecoechea ◽  
A. Barreto ◽  
J. Brestelli ◽  
B. P. Brunk ◽  
E. V. Caler ◽  
...  
Keyword(s):  
Functional Genomic ◽  
Genomic Resources ◽  
Microsporidia Species

scholarly journals Coral Life History and Symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata

BMC Genomics ◽  
2008 ◽  
Vol 9 (1) ◽  
pp. 97 ◽  
Author(s):  
Jodi A Schwarz ◽  
Peter B Brokstein ◽  
Christian R Voolstra ◽  
Astrid Y Terry ◽  
David J Miller ◽  
...  
Keyword(s):  
Life History ◽  
Functional Genomic ◽  
Acropora Palmata ◽  
Genomic Resources ◽  
Montastraea Faveolata

scholarly journals Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata

BMC Genomics ◽  
2008 ◽  
Vol 9 (1) ◽  
pp. 435 ◽  
Author(s):  
Jodi A Schwarz ◽  
Peter B Brokstein ◽  
Christian Voolstra ◽  
Astrid Y Terry ◽  
Chitra F Manohar ◽  
...  
Keyword(s):  
Life History ◽  
Functional Genomic ◽  
Acropora Palmata ◽  
Genomic Resources ◽  
Montastraea Faveolata

Functional genomic resources

2011 ◽  
Vol 9 (1) ◽  
pp. 35-35
Author(s):  
Nicole Rusk
Keyword(s):  
Functional Genomic ◽  
Genomic Resources

scholarly journals A roadmap for gene functional characterisation in wheat

2018 ◽  
Author(s):  
Nikolai M Adamski ◽  
Philippa Borrill ◽  
Jemima Brinton ◽  
Sophie Harrington ◽  
Clemence Marchal ◽  
...  
Keyword(s):  
Crop Improvement ◽  
Functional Genomic ◽  
Biological Processes ◽  
Model Species ◽  
High Quality ◽  
Genomic Resources ◽  
Current Review ◽  
Functional Characterisation ◽  
Recent Developments

Research in Arabidopsis and other model species has uncovered mechanisms regulating important biological processes in plants. With the advent of high quality functional genomic resources in wheat it is now possible to use this knowledge for crop improvement directly in wheat. In the current review, we describe some of the recent developments in wheat genomics focussing on published and publicly available resources and tools. We lay out a roadmap on how to make use of them and include a case study to exemplify them. We hope this review will be a helpful guide for plant scientists who already work on wheat or who are considering expanding their research into wheat.

scholarly journals The genome of the warm-season turfgrass African bermudagrass (Cynodon transvaalensis)

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Fengchao Cui ◽  
Geli Taier ◽  
Manli Li ◽  
Xiaoxia Dai ◽  
Nan Hang ◽  
...  
Keyword(s):  
Genetic Basis ◽  
Agronomic Traits ◽  
Warm Season ◽  
Genomic Research ◽  
Functional Genomic ◽  
Evolutionary Analysis ◽  
Ecological Significance ◽  
Genomic Resources ◽  
Transcriptome Comparison ◽  
Genomic Basis

AbstractCynodon species can be used for multiple purposes and have high economic and ecological significance. However, the genetic basis of the favorable agronomic traits of Cynodon species is poorly understood, partially due to the limited availability of genomic resources. In this study, we report a chromosome-scale genome assembly of a diploid Cynodon species, C. transvaalensis, obtained by combining Illumina and Nanopore sequencing, BioNano, and Hi-C. The assembly contains 282 scaffolds (~423.42 Mb, N50 = 5.37 Mb), which cover ~93.2% of the estimated genome of C. transvaalensis (~454.4 Mb). Furthermore, 90.48% of the scaffolds (~383.08 Mb) were anchored to nine pseudomolecules, of which the largest was 60.78 Mb in length. Evolutionary analysis along with transcriptome comparison provided a preliminary genomic basis for the adaptation of this species to tropical and/or subtropical climates, typically with dry summers. The genomic resources generated in this study will not only facilitate evolutionary studies of the Chloridoideae subfamily, in particular, the Cynodonteae tribe, but also facilitate functional genomic research and genetic breeding in Cynodon species for new leading turfgrass cultivars in the future.

Sign in / Sign up

Export Citation Format

Share Document