Microbial Life in Cold Regions of the Deep Sea

Author(s):  
Jupinder Kaur ◽  
A. L. Vishnu ◽  
Neha Khipla ◽  
Jaspreet Kaur
Keyword(s):  
Deep Sea ◽  
2021 ◽  
Author(s):  
Hinako Takamiya ◽  
Mariko Kouduka ◽  
Hitoshi Furutani ◽  
Hiroki Mukai ◽  
Takushi Yamamoto ◽  
...  

AbstractChemosynthetic organisms flourish around deep-sea hydrothermal vents where energy-rich fluids are emitted from metal sulfide chimneys. In contrast to actively venting chimneys, the nature of microbial life in extinct chimneys without fluid venting remains largely unknown. Here, the occurrence of ultra-small cells in silica-filled grain boundaries inside an extinct chimney is demonstrated by high-resolution bio-signature mapping. The ultra-small cells are associated with extracellularly precipitated Cu2O nanocrystals. Single-gene analysis shows that the chimney interior is dominated by a member of Pacearchaeota known as a major phylum of DPANN. Genome-resolved metagenomic analysis reveals that the chimney Pacearchaeota member is equipped with a nearly full set of genes for fermentation-based energy generation from nucleic acids, in contrast to previously characterized Pacearchaeota members lacking many genes for nucleic acid fermentation. We infer that the ultra-small cells associated with silica and extracellular Cu2O nanocrystals in the grain boundaries are Pacearchaeota, on the basis of the experimentally demonstrated capability of silica to concentrate nucleic acids from seawater and the presence of Cu-exporting genes in a reconstructed Pacearchaeota genome. Given the existence of ~3-billion-year-old submarine hydrothermally deposited silica, proliferation of microbial life using silica-bound nucleic acids might be relevant to the primitive vent biosphere.


2020 ◽  
Author(s):  
Alberto Scoma

AbstractMicrobial preference for elevated hydrostatic pressure (HP) is a recognized key feature of environmental and industrial processes. HP effects on macromolecules and, consequently, cell functionality has been accurately described in the last decades. While there is little debate about the importance of HP in shaping microbial life, a systematic definition of microbial preference for increased HP is missing. The lack of a consensus about ‘true’ piezophiles, and ‘low’ or ‘high’ HP levels, has deleterious repercussions on microbiology and biotechnology. As certain levels are considered ‘low’ they are not applied to assess microbial activity. Most microorganisms collected in deep waters or sediments have not been tested (nor isolated) using the corresponding HP at which they were captured. Microbial response to HP is notoriously dependent on other environmental parameters, most notably temperature, but also on availability of nutrients, growth substrate, pH and salinity. This implies that countless isolates retrieved from ambient pressure conditions may very well require increased HP to grow optimally, as already demonstrated in both Archaea and Bacteria.In the present study, I collected the data from described piezophilic isolates and used the fundamental correlation existing between HP and temperature, as first suggested in seminal works by Yayanos, to update the definition of piezophiles. Thanks to the numerous new piezophilic isolates available since such seminal studies, the present analysis brings forward updated definitions which concern 1) the actual beginning of the piezosphere, the area in the deep sea where piezophiles thrive; 2) the HP thresholds which should be considered low, medium and high HP, and their implications for experimental design in Microbiology; and 3) the nature of obligate piezophiles and their location in the deep sea.


2011 ◽  
Vol 13 (8) ◽  
pp. 2250-2268 ◽  
Author(s):  
Violetta La Cono ◽  
Francesco Smedile ◽  
Giovanni Bortoluzzi ◽  
Erika Arcadi ◽  
Giovanna Maimone ◽  
...  

2015 ◽  
Vol 112 (25) ◽  
pp. 7668-7672 ◽  
Author(s):  
Jill M. McDermott ◽  
Jeffrey S. Seewald ◽  
Christopher R. German ◽  
Sean P. Sylva

Arguments for an abiotic origin of low-molecular weight organic compounds in deep-sea hot springs are compelling owing to implications for the sustenance of deep biosphere microbial communities and their potential role in the origin of life. Theory predicts that warm H2-rich fluids, like those emanating from serpentinizing hydrothermal systems, create a favorable thermodynamic drive for the abiotic generation of organic compounds from inorganic precursors. Here, we constrain two distinct reaction pathways for abiotic organic synthesis in the natural environment at the Von Damm hydrothermal field and delineate spatially where inorganic carbon is converted into bioavailable reduced carbon. We reveal that carbon transformation reactions in a single system can progress over hours, days, and up to thousands of years. Previous studies have suggested that CH4 and higher hydrocarbons in ultramafic hydrothermal systems were dependent on H2 generation during active serpentinization. Rather, our results indicate that CH4 found in vent fluids is formed in H2-rich fluid inclusions, and higher n-alkanes may likely be derived from the same source. This finding implies that, in contrast with current paradigms, these compounds may form independently of actively circulating serpentinizing fluids in ultramafic-influenced systems. Conversely, widespread production of formate by ΣCO2 reduction at Von Damm occurs rapidly during shallow subsurface mixing of the same fluids, which may support anaerobic methanogenesis. Our finding of abiogenic formate in deep-sea hot springs has significant implications for microbial life strategies in the present-day deep biosphere as well as early life on Earth and beyond.


2013 ◽  
Vol 3 (1) ◽  
Author(s):  
Michail M. Yakimov ◽  
Violetta La Cono ◽  
Vladlen Z. Slepak ◽  
Gina La Spada ◽  
Erika Arcadi ◽  
...  

Marine Drugs ◽  
2021 ◽  
Vol 19 (2) ◽  
pp. 105
Author(s):  
Catherine R. Back ◽  
Henry L. Stennett ◽  
Sam E. Williams ◽  
Luoyi Wang ◽  
Jorge Ojeda Gomez ◽  
...  

To tackle the growing problem of antibiotic resistance, it is essential to identify new bioactive compounds that are effective against resistant microbes and safe to use. Natural products and their derivatives are, and will continue to be, an important source of these molecules. Sea sponges harbour a diverse microbiome that co-exists with the sponge, and these bacterial communities produce a rich array of bioactive metabolites for protection and resource competition. For these reasons, the sponge microbiota constitutes a potential source of clinically relevant natural products. To date, efforts in bioprospecting for these compounds have focused predominantly on sponge specimens isolated from shallow water, with much still to be learned about samples from the deep sea. Here we report the isolation of a new Micromonospora strain, designated 28ISP2-46T, recovered from the microbiome of a mid-Atlantic deep-sea sponge. Whole-genome sequencing reveals the capacity of this bacterium to produce a diverse array of natural products, including kosinostatin and isoquinocycline B, which exhibit both antibiotic and antitumour properties. Both compounds were isolated from 28ISP2-46T fermentation broths and were found to be effective against a plethora of multidrug-resistant clinical isolates. This study suggests that the marine production of isoquinocyclines may be more widespread than previously supposed and demonstrates the value of targeting the deep-sea sponge microbiome as a source of novel microbial life with exploitable biosynthetic potential.


1980 ◽  
Vol 26 (12) ◽  
pp. 1375-1385 ◽  
Author(s):  
Richard Y. Morita
Keyword(s):  
Deep Sea ◽  

2014 ◽  
Vol 80 (19) ◽  
pp. 5992-6003 ◽  
Author(s):  
Angeliki Marietou ◽  
Douglas H. Bartlett

ABSTRACTHydrostatic pressure is an important parameter influencing the distribution of microbial life in the ocean. In this study, the response of marine bacterial populations from surface waters to pressures representative of those under deep-sea conditions was examined. Southern California coastal seawater collected 5 m below the sea surface was incubated in microcosms, using a range of temperatures (16 to 3°C) and hydrostatic pressure conditions (0.1 to 80 MPa). Cell abundance decreased in response to pressure, while diversity increased. The morphology of the community also changed with pressurization to a predominant morphotype of small cocci. The pressure-induced community changes included an increase in the relative abundance ofAlphaproteobacteria,Gammaproteobacteria,Actinobacteria, andFlavobacterialargely at the expense ofEpsilonproteobacteria. Culturable high-pressure-surviving bacteria were obtained and found to be phylogenetically similar to isolates from cold and/or deep-sea environments. These results provide novel insights into the response of surface water bacteria to changes in hydrostatic pressure.


1977 ◽  
Vol 236 (6) ◽  
pp. 42-52 ◽  
Author(s):  
Holger W. Jannasch ◽  
Carl O. Wirsen
Keyword(s):  
Deep Sea ◽  

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