Functional roles of protein domains on rice α-amylase activity

1997 ◽  
Vol 47 (4) ◽  
pp. 364-367 ◽  
Author(s):  
M. Terashima ◽  
M. Hosono ◽  
S. Katoh
1994 ◽  
Vol 6 (4) ◽  
pp. 487-500 ◽  
Author(s):  
T W McNellis ◽  
A G von Arnim ◽  
T Araki ◽  
Y Komeda ◽  
S Miséra ◽  
...  

2019 ◽  
Author(s):  
Daniel Buchan ◽  
David Jones

AbstractIn this paper, using word2vec, we demonstrate that proteins domains may have semantic “meaning” in the context of multi-domain proteins. Word2vec is a group of models which can be used to produce semantically meaningful embeddings of words or tokens in a vector space. In this work we treat multi-domain proteins as “sentences” where domain identifiers are tokens which may be considered as “words”. Using all Interpro (Finn, Attwood et al. 2017) eukaryotic proteins as a corpus of “sentences” we demonstrate that Word2vec creates functionally meaningful embeddings of protein domains. We additionally show how this can be applied to identifying the putative functional roles for Pfam (Finn, Coggill et al. 2016) Domains of Unknown Function.


1994 ◽  
Vol 6 (4) ◽  
pp. 487 ◽  
Author(s):  
Timothy W. McNellis ◽  
Albrecht G. von Arnim ◽  
Takashi Araki ◽  
Yoshibumi Komeda ◽  
Simon Misera ◽  
...  

1997 ◽  
Vol 70 (2) ◽  
pp. 97-103 ◽  
Author(s):  
YOSHINORI MATSUO ◽  
TSUNEYUKI YAMAZAKI

Using second- or third-chromosome substitution lines of Drosophila melanogaster, the genetic variation of inducibility and amylase specific activities in three media (starch, normal and glucose) were investigated. Genetic factors on both the second and third chromosomes were responsible for the variation in amylase specific activity and inducibility. In glucose medium, the genetic variance of amylase specific activity estimated for the second-chromosome substitution lines was larger than that for the third-chromosome substitution lines; however, for starch medium and inducibility, the variance was larger for the third-chromosome substitution lines. High correlations for the second-chromosome substitution lines and low correlations for the third-chromosome substitution lines were observed for amylase specific activities in different media. These results suggest that the genetic factor(s) responsible for inducibility or amylase activity variation in an induced medium such as starch should be on the third chromosome and those in the non-induced medium such as glucose should be on the second chromosome. The functional roles of the factors on the second and third chromosomes would be the repression and induction of amylase, respectively.


2014 ◽  
Vol 28 (1) ◽  
pp. 49-60 ◽  
Author(s):  
Justin Bo-Kai Hsu ◽  
Kai-Yao Huang ◽  
Tzu-Ya Weng ◽  
Chien-Hsun Huang ◽  
Tzong-Yi Lee

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