Biological nitrification inhibition by sorghum root exudates impacts ammonia-oxidizing bacteria but not ammonia-oxidizing archaea

Author(s):  
Yaying Li ◽  
Yang Zhang ◽  
Stephen James Chapman ◽  
Huaiying Yao
Agronomy ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 1003 ◽  
Author(s):  
Satoshi Nakamura ◽  
Papa Sarr Saliou ◽  
Minako Takahashi ◽  
Yasuo Ando ◽  
Guntur Venkata Subbarao

Aims: Biological nitrification inhibition (BNI) has been reported as an emerging technology to control soil nitrifier activity for effective N-utilization in cropping systems. Brachiaria have been reported to suppress nitrifier populations by releasing nitrification inhibitors from roots through exudation. Substantial BNI activity has been reported to be present in the root tissues of Brachiaria grasses; however, BNI contribution, such as root turnover, has not been addressed in previous studies. The present study aimed to clarify the contribution of root turnover on BNI under Brachiaria cultivations and its impact on nitrifier populations. Methods: We monitored root growth, changes in ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) numbers, nitrification rate, and available nitrogen (N) content under seven germplasm lines of Brachiaria, for 18 months with seasonal profile sampling. Results: Brachiaria cultivation increased soil NH4+-N, available N, and total soil carbon levels. Though we did not find any correlation between the changes in AOB populations and potential nitrification, the potential nitrification rate decreased when AOA populations decreased. Multiple regression analysis indicated that BNI substances from root tissue turnover had a significant contribution to the BNI function in the field. Conclusion Results indicated that the inhibitory effect of BNI was mostly evident in AOA, and not in AOB, in this study. Brachiaria cvs. ‘Marandu’, ‘Mulato’, and ‘Tupy’ had the most substantial BNI effect among the seven cultivars evaluated. The estimated total BNI activities and available N content of root tissue explained the observed nitrification inhibition. In conclusion, the release of BNI substances through plant decomposition contributes to the decrease in the abundance of AOA, and thus the inhibition of nitrification under Brachiaria cultivation.


2017 ◽  
Vol 68 (8) ◽  
pp. 798 ◽  
Author(s):  
Cathryn A. O'Sullivan ◽  
Kelley Whisson ◽  
Karen Treble ◽  
Margaret M. Roper ◽  
Shayne F. Micin ◽  
...  

This study investigated the ability of several plant species commonly occurring as weeds in Australian cropping systems to produce root exudates that inhibit nitrification via biological nitrification inhibition (BNI). Seedlings of wild radish (Raphanus raphanistrum), great brome grass (Bromus diandrus), wild oats (Avena fatua), annual ryegrass (Lolium rigidum) and Brachiaria humidicola (BNI-positive control) were grown in hydroponics, and the impact of their root exudates on NO3– production by Nitrosomonas europaea was measured in a pure-culture assay. A pot study (soil-based assay) was then conducted to confirm the ability of the weeds to inhibit nitrification in whole soils. All of the tested weeds slowed NO3– production by N. europaea in the pure-culture assay and significantly inhibited potential nitrification rates in soil-based assays. Root exudates produced by wild radish were the most inhibitory, slowing NO3– production by the pure culture of N. europaea by 53 ± 6.1% and completely inhibiting nitrification in the soil-based assay. The other weed species all had BNI capacities comparable to that of B. humidicola and significantly higher than that previously reported for wheat cv. Janz. This study demonstrates that several commonly occurring weed species have BNI capacity. By altering the N cycle, and retaining NH4+ in the soils in which they grow, these weeds may gain a competitive advantage over species (including crops) that prefer NO3–. Increasing our understanding of how weeds compete with crops for N may open avenues for novel weed-management strategies.


PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4960 ◽  
Author(s):  
Chelsea K. Janke ◽  
Laura A. Wendling ◽  
Ryosuke Fujinuma

Australian native species grow competitively in nutrient limited environments, particularly in nitrogen (N) limited soils; however, the mechanism that enables this is poorly understood. Biological nitrification inhibition (BNI), which is the release of root exudates into the plant rhizosphere to inhibit the nitrification process, is a hypothesized adaptive mechanism for maximizing N uptake. To date, few studies have investigated the temporal pattern and components of root exudates by Australian native plant species for BNI. This study examined root exudates from two Australian native species,Hibiscus splendensandSolanum echinatum,and contrasted with exudates ofSorghum bicolor, a plant widely demonstrated to exhibit BNI capacity. Root exudates were collected from plants at two, four, and six weeks after transplanting to solution culture. Root exudates contained three types of organic acids (OAs), oxalic, citric and succinic acids, regardless of the species. However, the two Australian natives species released larger amount of OAs in earlier development stages thanS. bicolor. The total quantity of these OAs released per unit root dry mass was also seven-ten times greater for Australian native plant species compared toS. bicolor. The root exudates significantly inhibited nitrification activity over six weeks’ growth in a potential nitrification assay, withS. echinatum(ca. 81% inhibition) >S. bicolor(ca. 80% inhibition) >H. splendens(ca. 78% inhibition). The narrow range of BNI capacity in the study plants limited the determination of a relationship between OAs and BNI; however, a lack of correlation between individual OAs and inhibition of nitrification suggests OAs may not directly contribute to BNI. These results indicate that Australian native species generate a strongly N conserving environment within the rhizosphere up to six weeks after germination, establishing a competitive advantage in severely N limited environments.


Author(s):  
Arindam Ghatak ◽  
Florian Schindler ◽  
Gert Bachmann ◽  
Doris Engelmeier ◽  
Prasad Bajaj ◽  
...  

AbstractRoots secrete a vast array of low molecular weight compounds into the soil broadly referred to as root exudates. It is a key mechanism by which plants and soil microbes interact in the rhizosphere. The effect of drought stress on the exudation process and composition is rarely studied, especially in cereal crops. This study focuses on comparative metabolic profiling of the exudates from sensitive and tolerant genotypes of pearl millet after a period of drought stress. We employed a combined platform of gas and liquid chromatography coupled to mass spectrometry to cover both primary and secondary metabolites. The results obtained demonstrate that both genotype and drought stress have a significant impact on the concentration and composition of root exudates. The complexity and function of these differential root exudates are discussed. To reveal the potential effect of root exudates on the soil microbial community after a period of drought stress, we also tested for biological nitrification inhibition (BNI) activity. The analysis revealed a genotype-dependent enhancement of BNI activity after a defined period of drought stress. In parallel, we observed a genotype-specific relation of elongated root growth and root exudation under drought stress. These data suggest that the drought stress-dependent change in root exudation can manipulate the microbial soil communities to adapt and survive under harsh conditions.


2016 ◽  
Vol 212 (3) ◽  
pp. 646-656 ◽  
Author(s):  
Li Sun ◽  
Yufang Lu ◽  
Fangwei Yu ◽  
Herbert J. Kronzucker ◽  
Weiming Shi

2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Laibin Huang ◽  
Seemanti Chakrabarti ◽  
Jennifer Cooper ◽  
Ana Perez ◽  
Sophia M. John ◽  
...  

AbstractNitrification is a central process in the global nitrogen cycle, carried out by a complex network of ammonia-oxidizing archaea (AOA), ammonia-oxidizing bacteria (AOB), complete ammonia-oxidizing (comammox) bacteria, and nitrite-oxidizing bacteria (NOB). Nitrification is responsible for significant nitrogen leaching and N2O emissions and thought to impede plant nitrogen use efficiency in agricultural systems. However, the actual contribution of each nitrifier group to net rates and N2O emissions remain poorly understood. We hypothesized that highly fertile agricultural soils with high organic matter mineralization rates could allow a detailed characterization of N cycling in these soils. Using a combination of molecular and activity measurements, we show that in a mixed AOA, AOB, and comammox community, AOA outnumbered low diversity assemblages of AOB and comammox 50- to 430-fold, and strongly dominated net nitrification activities with low N2O yields between 0.18 and 0.41 ng N2O–N per µg NOx–N in cropped, fallow, as well as native soil. Nitrification rates were not significantly different in plant-covered and fallow plots. Mass balance calculations indicated that plants relied heavily on nitrate, and not ammonium as primary nitrogen source in these soils. Together, these results imply AOA as integral part of the nitrogen cycle in a highly fertile agricultural soil.


Author(s):  
Junnosuke Otaka ◽  
Guntur Venkata Subbarao ◽  
Hiroshi Ono ◽  
Tadashi Yoshihashi

AbstractTo control agronomic N losses and reduce environmental pollution, biological nitrification inhibition (BNI) is a promising strategy. BNI is an ecological phenomenon by which certain plants release bioactive compounds that can suppress nitrifying soil microbes. Herein, we report on two hydrophobic BNI compounds released from maize root exudation (1 and 2), together with two BNI compounds inside maize roots (3 and 4). On the basis of a bioassay-guided fractionation method using a recombinant nitrifying bacterium Nitrosomonas europaea, 2,7-dimethoxy-1,4-naphthoquinone (1, ED50 = 2 μM) was identified for the first time from dichloromethane (DCM) wash concentrate of maize root surface and named “zeanone.” The benzoxazinoid 2-hydroxy-4,7-dimethoxy-2H-1,4-benzoxazin-3(4H)-one (HDMBOA, 2, ED50 = 13 μM) was isolated from DCM extract of maize roots, and two analogs of compound 2, 2-hydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one (HMBOA, 3, ED50 = 91 μM) and HDMBOA-β-glucoside (4, ED50 = 94 μM), were isolated from methanol extract of maize roots. Their chemical structures (1–4) were determined by extensive spectroscopic methods. The contributions of these four isolated BNI compounds (1–4) to the hydrophobic BNI activity in maize roots were 19%, 20%, 2%, and 4%, respectively. A possible biosynthetic pathway for zeanone (1) is proposed. These results provide insights into the strength of hydrophobic BNI activity released from maize root systems, the chemical identities of the isolated BNIs, and their relative contribution to the BNI activity from maize root systems.


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