Fine-grained investigation of the relationship between human nutrition and global DNA methylation patterns

2021 ◽  
Author(s):  
Fabrizia Noro ◽  
Annalisa Marotta ◽  
Marialaura Bonaccio ◽  
Simona Costanzo ◽  
Federica Santonastaso ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Human Nutrition ◽  
Global Dna Methylation ◽  
Fine Grained ◽  
Methylation Patterns ◽  
The Relationship

scholarly journals Parenting stress and DNA methylation among African Americans in the InterGEN Study

2017 ◽  
Vol 1 (6) ◽  
pp. 328-333 ◽  
Author(s):  
Michelle L. Wright ◽  
Yunfeng Huang ◽  
Qin Hui ◽  
Kevin Newhall ◽  
Cindy Crusto ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Parenting Stress ◽  
Mixed Models ◽  
Life Stress ◽  
Significant Variation ◽  
African Ancestry ◽  
Maternal Parenting ◽  
Maternal Parenting Stress ◽  
Methylation Patterns ◽  
The Relationship

IntroductionGeneral life stress has been associated with altered DNA methylation in individuals of African Ancestry, although the relationship between parenting stress and DNA methylation has not been described. The purpose of this study was to examine the relationship between maternal parenting stress and DNA methylation among African Ancestry mother-child dyads.MethodsWe evaluated epigenome-wide DNA methylation relative to parenting stress in 74 mother-child dyads using linear mixed models.ResultsSignificant variation in maternal DNA methylation at 95 CpG sites was associated with level of parenting stress. Notably, we identified a change in DNA methylation associated with poly (ADP-ribose) polymerase-1, which plays a key role in stress signaling. We did not identify any significant variation in child DNA methylation related to maternal parenting stress.ConclusionsHowever, DNA methylation patterns observed in children mirrored patterns observed in their mothers. The results suggest that differential maternal DNA methylation is associated with higher levels of parenting stress.

scholarly journals DNA methylation and cognitive functioning in healthy older adults

2011 ◽  
Vol 107 (5) ◽  
pp. 744-748 ◽  
Author(s):  
Olga J. G. Schiepers ◽  
Martin P. J. van Boxtel ◽  
Renate H. M. de Groot ◽  
Jelle Jolles ◽  
Frans J. Kok ◽  
...  
Keyword(s):  
Older Adults ◽  
Dna Methylation ◽  
Folic Acid ◽  
Cognitive Functioning ◽  
Cognitive Performance ◽  
Global Dna Methylation ◽  
Older Individuals ◽  
Healthy Older Adults ◽  
Study Results ◽  
The Relationship

Long-term supplementation with folic acid may improve cognitive performance in older individuals. The relationship between folate status and cognitive performance might be mediated by changes in methylation capacity, as methylation reactions are important for normal functioning of the brain. Although aberrant DNA methylation has been implicated in neurodevelopmental disorders, the relationship between DNA methylation status and non-pathological cognitive functioning in human subjects has not yet been investigated. The present study investigated the associations between global DNA methylation and key domains of cognitive functioning in healthy older adults. Global DNA methylation, defined as the percentage of methylated cytosine to total cytosine, was measured in leucocytes by liquid chromatography–MS/MS, in 215 men and women, aged 50–70 years, who participated in the Folic Acid and Carotid Intima-Media Thickness (FACIT) study (clinical trial registration number NCT00110604). Cognitive performance was assessed by means of the Visual Verbal Word Learning Task, the Stroop Colour-Word Interference Test, the Concept Shifting Test, the Letter–Digit Substitution Test and the Verbal Fluency Test. Using hierarchical linear regression analyses adjusted for age, sex, level of education, alcohol consumption, smoking status, physical activity, erythrocyte folate concentration and 5,10-methylenetetrahydrofolate reductase 677 C → T genotype, we found that global DNA methylation was not related to cognitive performance on any of the domains measured. The present study results do not support the hypothesis that global DNA methylation, as measured in leucocytes, might be associated with cognitive functioning in healthy older individuals.

scholarly journals Global DNA methylation patterns through an array-based approach in small intestinal neuroendocrine tumors

2013 ◽  
Vol 21 (1) ◽  
pp. L5-L7 ◽  
Author(s):  
Alberto Delgado Verdugo ◽  
Joakim Crona ◽  
Lee Starker ◽  
Peter Stålberg ◽  
Göran Åkerström ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Neuroendocrine Tumors ◽  
Global Dna Methylation ◽  
Small Intestinal ◽  
Methylation Patterns

scholarly journals A maternal effect regulates global DNA methylation patterns

2020 ◽  
Author(s):  
Remco Loos ◽  
Valeria Carola ◽  
Enrica Audero ◽  
Elena Brini ◽  
Luisa Lo Iacono ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Maternal Effect ◽  
Cpg Island ◽  
Inbred Mouse ◽  
Mouse Strains ◽  
Global Dna Methylation ◽  
Global Methylation ◽  
Genome Methylation ◽  
Genetic And Environmental Factors ◽  
Methylation Patterns

AbstractVariation in DNA methylation between individuals has been shown to be influenced by both genetic and environmental factors. However, the relative impact of genetic and non-genetic factors on DNA methylation patterns across the mammalian genome has not been systematically studied. We performed whole-genome methylation analysis in two inbred mouse strains, revealing striking differences in the global distribution of DNA methylation. Although global methylation patterns were indistinguishable for most genomic features, a significant increase in the number of unmethylated CpG-island promoters and first exons was observed between strains. Experiments using F1 reciprocal hybrid strains demonstrated that the genotype of the mother dictated global DNA methylation patterns. Cross-fostering experiments ruled out a postnatal maternal effect on these differences and suggested that they were driven by a prenatal maternal effect, possibly via differential deposition of maternal gene products into the oocyte or uterine environment. These data demonstrate that maternal effects have a major impact on global DNA methylation patterns.

scholarly journals Global DNA methylation, as estimated in blood samples, does not correlate with variations of body condition, anatomical features and hematological parameters in American bullfrogs (Lithobates catesbeianus) kept captive under distinct environmental conditions

2017 ◽  
Author(s):  
Braulio Ayala García ◽  
Alma L. Fuentes-Farías ◽  
Gabriel Gutiérrez Ospina
Keyword(s):  
Dna Methylation ◽  
Environmental Conditions ◽  
Hematological Parameters ◽  
Gene Mutations ◽  
Global Dna Methylation ◽  
Lithobates Catesbeianus ◽  
American Bullfrog ◽  
Males And Females ◽  
Scaled Mass Index ◽  
The Relationship

AbstractDifferent levels of Global DNA Methylation (GDM) could have facilitated the emergence of new species, without relying on gene mutations, through promoting ontogenetic phenotypic plasticity. If this assertion was correct, one could expect individuals of the same species living under distinct environmental conditions to be genetically similar, but having different GDM levels and being phenotypically divergent. We tested this presumption by studying the relationship between variability of functional morphological traits and GDM levels in American bullfrog (Lithobates catesbeianus), in green houses located in two geographical sites. Our analyses revealed that body linear morphometry, skull geometry, scaled mass index, packed cell volume and neutrophil counts differed significantly among males and females within and between localities. GDM, nonetheless, was rather similar among sex and locality groups. These results show that levels of GDM, at least under our experimental contexts, does not correlate with functional morphological trait variability.

scholarly journals Influence of tobacco cigarette heavy smoking on DNA methylation patterns and transcription levels of MAPK8IP3, GAA, ANXA2, PRRC2A, and PDE11A genes in human spermatozoa

2021 ◽  
Vol 26 (1) ◽  
Author(s):  
Mohammed M. Laqqan ◽  
Maged M. Yassin
Keyword(s):  
Dna Methylation ◽  
Semen Parameters ◽  
Global Dna Methylation ◽  
Transcription Level ◽  
Heavy Smoking ◽  
Tobacco Cigarette ◽  
Sperm Dna ◽  
Methylation Patterns ◽  
Heavy Smokers ◽  
Sperm Dna Methylation

Abstract Background Tobacco smoking is considered as one of the lifestyles factors that influence the sperm DNA methylation and global sperm DNA methylation and that may affect the sperm phenotype. This study was performed to investigate whether tobacco cigarette heavy smoking influences sperm DNA methylation patterns and semen parameters and to determine whether there is an alteration in the transcription level of MAPK8IP3, GAA, ANXA2, PRRC2A, and PDE11A genes in heavy smokers compared to non-smokers. Thirty samples were subjected to 450K arrays as a screening study to assess the variation in sperm DNA methylation levels between heavy smokers and non-smokers. Five CpG sites have the highest difference in methylation levels (cg07869343, cg05813498, cg09785377, cg06833981, and cg02745784), which are located in the MAPK8IP3, GAA, ANXA2, PRRC2A, and PDE11A genes, respectively, and were selected for further analysis using deep bisulfite sequencing in 280 independent samples (120 proven non-smokers and 160 heavy smokers) with a mean age of 33.8 ± 8.4 years. The global sperm DNA methylation, sperm DNA fragmentation, and chromatin non-condensation were evaluated also. Results A significant increase was found in the methylation level at seven, three, and seventeen CpGs within the GAA, ANXA2, and MAPK8IP3 genes amplicon, respectively (P< 0.01) in heavy smokers compared to non-smokers. Additionally, a significant increase was found in the methylation levels at all CpGs within PRRC2A and PDE11A gene amplicon (P< 0.01). A significant increase was found in the level of sperm chromatin non-condensation, DNA fragmentation, and global DNA methylation (P < 0.001) in heavy smokers compared to non-smokers. Conclusion These results indicate that tobacco cigarette smoking can alter the DNA methylation level at several CpGs, the status of global DNA methylation, and transcription level of the following genes “MAPK8IP3, GAA, ANXA2, PRRC2A, and PDE11A” in human spermatozoa. These findings may affect negatively semen parameters and men’s fertility.

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