Voxel-MARS: a method for early detection of Alzheimer’s disease by classification of structural brain MRI

2017 ◽  
Vol 258 (1) ◽  
pp. 31-57 ◽  
Author(s):  
Alper Çevik ◽  
◽  
Gerhard-Wilhelm Weber ◽  
B. Murat Eyüboğlu ◽  
Kader Karlı Oğuz
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Early Detection ◽  
Brain Mri ◽  
Structural Brain

scholarly journals Association between polygenic risk for Alzheimer’s disease, brain structure and cognitive abilities in UK Biobank.

2021 ◽  
Author(s):  
Rachana Tank ◽  
Joey Ward ◽  
Kristin E. Flegal ◽  
Daniel Smith ◽  
Mark E.S. Bailey ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Fluid Intelligence ◽  
Late Onset ◽  
Brain Mri ◽  
Brain Magnetic Resonance Imaging ◽  
Healthy Adults ◽  
Uk Biobank ◽  
Polygenic Risk ◽  
Structural Brain

Background and purpose: Previous studies testing associations between polygenic risk for late-onset Alzheimer’s disease (LOAD-PGR) and brain magnetic resonance imaging (MRI) measures have been limited by small samples and inconsistent consideration of potential confounders. This study investigates whether higher LOAD-PGR is associated with differences in structural brain imaging and cognitive values in a relatively large sample of non-demented, generally healthy adults (UK Biobank). Method: Summary statistics were used to create PGR scores for n=32,790 participants using LDpred. Outcomes included 12 structural MRI volumes and 6 concurrent cognitive measures. Models were adjusted for age, sex, body mass index, genotyping chip, 8 principal components, lifetime smoking, apolipoprotein (APOE) e4 genotype and socioeconomic deprivation. We tested for statistical interactions between APOE e4 allele dose and LOAD-PGR vs. all outcomes. Results: In fully adjusted models, LOAD-PGR was associated with worse fluid intelligence (standardised beta [β] = -0.080 per LOAD-PGR standard deviation, p = 0.002), matrix completion (β = -0.102, p = 0.003), smaller left hippocampal total (β = -0.118, p = 0.002) and body (β = -0.069, p = 0.002) volumes, but not other hippocampal subdivisions. There were no significant APOE x LOAD-PGR score interactions for any outcomes in fully adjusted models. Discussion: This is the largest study to date investigating LOAD-PGR and non-demented structural brain MRI and cognition phenotypes. LOAD-PGR was associated with smaller hippocampal volumes and aspects of cognitive ability in healthy adults, and could supplement APOE status in risk stratification of cognitive impairment/LOAD.

scholarly journals Deep Learning in Brain MRI: Effect of Data Leakage Due to Slice-level Split Using 2D Convolutional Neural Networks

2021 ◽  
Author(s):  
Ekin Yagis ◽  
Selamawet Workalemahu Atnafu ◽  
Alba García Seco de Herrera ◽  
Chiara Marzi ◽  
Marco Giannelli ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Neural Networks ◽  
Alzheimer's Disease ◽  
Convolutional Neural Networks ◽  
De Novo ◽  
Neurological Diseases ◽  
Brain Mri ◽  
Progression Markers ◽  
Magnetic Resonance Imaging Mri

Abstract In recent years, 2D convolutional neural networks (CNNs) have been extensively used for the diagnosis of neurological diseases from magnetic resonance imaging (MRI) data due to their potential to discern subtle and intricate patterns. Despite the high performances reported in numerous studies, developing CNN models with good generalization abilities is still a challenging task due to possible data leakage introduced during cross-validation (CV). In this study, we quantitatively assessed the effect of a data leakage caused by 3D MRI data splitting based on a 2D slice-level using three 2D CNN models for the classification of patients with Alzheimer’s disease (AD) and Parkinson’s disease (PD). Our experiments showed that slice-level CV erroneously boosted the average slice level accuracy on the test set by 30% on Open Access Series of Imaging Studies (OASIS), 29% on Alzheimer’s Disease Neuroimaging Initiative (ADNI), 48% on Parkinson's Progression Markers Initiative (PPMI) and 55% on a local de-novo PD Versilia dataset. Further tests on a randomly labeled OASIS-derived dataset produced about 96% of (erroneous) accuracy (slice-level split) and 50% accuracy (subject-level split), as expected from a randomized experiment. Overall, the extent of the effect of an erroneous slice-based CV is severe, especially for small datasets.

scholarly journals 3D CNN Design for the Classification of Alzheimer’s Disease Using Brain MRI and PET

IEEE Access ◽  
2020 ◽  
Vol 8 ◽  
pp. 217830-217847
Author(s):  
Bijen Khagi ◽  
Goo-Rak Kwon
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Brain Mri ◽  
3D Cnn

Classification of Alzheimer’s disease based on brain MRI and machine learning

2019 ◽  
Vol 32 (7) ◽  
pp. 1927-1936 ◽  
Author(s):  
Zhao Fan ◽  
Fanyu Xu ◽  
Xuedan Qi ◽  
Cai Li ◽  
Lili Yao
Keyword(s):  
Machine Learning ◽  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Brain Mri

scholarly journals Diagnosis and Classification of Alzheimer's Disease by Using a Convolution Neural Network Algorithm

2021 ◽  
Author(s):  
Mosleh Hmoud Al-Adhaileh
Keyword(s):  
Neural Network ◽  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Early Stage ◽  
Brain Mri ◽  
Brain Magnetic Resonance Imaging ◽  
Classification Systems ◽  
Detection Accuracy ◽  
Learning Approaches

Abstract Alzheimer's disease (AD) is a high-risk and atrophic neurological illness that slowly and gradually destroys brain cells (i.e. neurons). As the most common type of amentia, AD affects 60–65% of all people with amentia and poses major health dangers to middle-aged and elderly people. For classification of AD in the early stage, classification systems and computer-aided diagnostic techniques have been developed. Previously, machine learning approaches were applied to develop diagnostic systems by extracting features from neural images. Currently, deep learning approaches have been used in many real-time medical imaging applications. In this study, two deep neural network techniques, AlexNet and Restnet50, were applied for the classification and recognition of AD. The data used in this study to evaluate and test the proposed model included those from brain magnetic resonance imaging (MRI) images collected from the Kaggle website. A convolutional neural network (CNN) algorithm was applied to classify AD efficiently. CNNs were pre-trained using AlexNet and Restnet50 transfer learning models. The results of this experimentation showed that the proposed method is superior to the existing systems in terms of detection accuracy. The AlexNet model achieved outstanding performance based on five evaluation metrics (accuracy, F1 score, precision, sensitivity and specificity) for the brain MRI datasets. AlexNet displayed an accuracy of 94.53%, specificity of 98.21%, F1 score of 94.12% and sensitivity of 100%, outperforming Restnet50. The proposed method can help improve CAD methods for AD in medical investigations.

Construction of MRI-Based Alzheimer’s Disease Score Based on Efficient 3D Convolutional Neural Network: Comprehensive Validation on 7,902 Images from a Multi-Center Dataset

2021 ◽  
Vol 79 (1) ◽  
pp. 47-58
Author(s):  
Evangeline Yee ◽  
Da Ma ◽  
Karteek Popuri ◽  
Lei Wang ◽  
Mirza Faisal Beg ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Comprehensive Evaluation ◽  
Brain Mri ◽  
Unseen Data ◽  
Short Period ◽  
3D Cnn ◽  
Memory Constraints ◽  
Normal Controls

Background: In recent years, many convolutional neural networks (CNN) have been proposed for the classification of Alzheimer’s disease. Due to memory constraints, many of the proposed CNNs work at a 2D slice-level or 3D patch-level. Objective: Here, we propose a subject-level 3D CNN that can extract the neurodegenerative patterns of the whole brain MRI and converted into a probabilistic Dementia score. Methods: We propose an efficient and lightweight subject-level 3D CNN featuring dilated convolutions. We trained our network on the ADNI data on stable Dementia of the Alzheimer’s type (sDAT) from stable normal controls (sNC). To comprehensively evaluate the generalizability of our proposed network, we performed four independent tests which includes testing on images from other ADNI individuals at various stages of the dementia, images acquired from other sites (AIBL), images acquired using different protocols (OASIS), and longitudinal images acquired over a short period of time (MIRIAD). Results: We achieved a 5-fold cross-validated balanced accuracy of 88%in differentiating sDAT from sNC, and an overall specificity of 79.5%and sensitivity 79.7%on the entire set of 7,902 independent test images. Conclusion: Independent testing is essential for estimating the generalization ability of the network to unseen data, but is often lacking in studies using CNN for DAT classification. This makes it difficult to compare the performances achieved using different architectures. Our comprehensive evaluation highlighting the competitive performance of our network and potential promise for generalization.

scholarly journals Association between polygenic risk for Alzheimer’s disease, brain structure and cognitive abilities in UK Biobank

2021 ◽  
Author(s):  
Rachana Tank ◽  
Joey Ward ◽  
Kristin E. Flegal ◽  
Daniel J. Smith ◽  
Mark E. S. Bailey ◽  
...  
Keyword(s):  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Fluid Intelligence ◽  
Late Onset ◽  
Brain Mri ◽  
Brain Magnetic Resonance Imaging ◽  
Healthy Adults ◽  
Uk Biobank ◽  
Polygenic Risk ◽  
Structural Brain

AbstractPrevious studies testing associations between polygenic risk for late-onset Alzheimer’s disease (LOAD-PGR) and brain magnetic resonance imaging (MRI) measures have been limited by small samples and inconsistent consideration of potential confounders. This study investigates whether higher LOAD-PGR is associated with differences in structural brain imaging and cognitive values in a relatively large sample of non-demented, generally healthy adults (UK Biobank). Summary statistics were used to create PGR scores for n = 32,790 participants using LDpred. Outcomes included 12 structural MRI volumes and 6 concurrent cognitive measures. Models were adjusted for age, sex, body mass index, genotyping chip, 8 genetic principal components, lifetime smoking, apolipoprotein (APOE) e4 genotype and socioeconomic deprivation. We tested for statistical interactions between APOE e4 allele dose and LOAD-PGR vs. all outcomes. In fully adjusted models, LOAD-PGR was associated with worse fluid intelligence (standardised beta [β] = −0.080 per LOAD-PGR standard deviation, p = 0.002), matrix completion (β = −0.102, p = 0.003), smaller left hippocampal total (β = −0.118, p = 0.002) and body (β = −0.069, p = 0.002) volumes, but not other hippocampal subdivisions. There were no significant APOE x LOAD-PGR score interactions for any outcomes in fully adjusted models. This is the largest study to date investigating LOAD-PGR and non-demented structural brain MRI and cognition phenotypes. LOAD-PGR was associated with smaller hippocampal volumes and aspects of cognitive ability in healthy adults and could supplement APOE status in risk stratification of cognitive impairment/LOAD.

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