scholarly journals Genome-wide analysis of Dof transcription factors reveals functional characteristics during development and response to biotic stresses in pepper

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Won-Hee Kang ◽  
Seungill Kim ◽  
Hyun-Ah Lee ◽  
Doil Choi ◽  
Seon-In Yeom
Keyword(s):  
Transcription Factors ◽  
Functional Characteristics ◽  
Biotic Stresses ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Dof Transcription Factors

Dof transcription factors in carrot: genome-wide analysis and their response to abiotic stress

2015 ◽  
Vol 38 (1) ◽  
pp. 145-155 ◽  
Author(s):  
Wei Huang ◽  
Ying Huang ◽  
Meng-yao Li ◽  
Feng Wang ◽  
Zhi-sheng Xu ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Abiotic Stress ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Dof Transcription Factors

Genome-wide analysis of the Dof transcription factors in castor bean (Ricinus communis L.)

2014 ◽  
Vol 36 (4) ◽  
pp. 527-537 ◽  
Author(s):  
Zhengwei Jin ◽  
Umashankar Chandrasekaran ◽  
Aizhong Liu
Keyword(s):  
Transcription Factors ◽  
Castor Bean ◽  
Ricinus Communis ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Ricinus Communis L ◽  
Dof Transcription Factors

scholarly journals Genome-wide analysis of the Dof gene family in durian reveals fruit ripening-associated and cultivar-dependent Dof transcription factors

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Gholamreza Khaksar ◽  
Wassakarn Sangchay ◽  
Pinnapat Pinsorn ◽  
Lalida Sangpong ◽  
Supaart Sirikantaramas
Keyword(s):  
Transcription Factors ◽  
Gene Family ◽  
Fruit Ripening ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Dof Transcription Factors

scholarly journals Genome-Wide Identification and Analysis of the WRKY Gene Family and Cold Stress Response in Acer truncatum

Genes ◽  
2021 ◽  
Vol 12 (12) ◽  
pp. 1867
Author(s):  
Yan Li ◽  
Xiang Li ◽  
Jiatong Wei ◽  
Kewei Cai ◽  
Hongzhi Zhang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Stress Response ◽  
Cold Stress ◽  
Gene Family ◽  
Gene Families ◽  
Regulatory Function ◽  
Wrky Gene ◽  
Wrky Transcription Factors ◽  
Biotic Stresses ◽  
Genome Wide

WRKY transcription factors constitute one of the largest gene families in plants and are involved in many biological processes, including growth and development, physiological metabolism, and the stress response. In earlier studies, the WRKY gene family of proteins has been extensively studied and analyzed in many plant species. However, information on WRKY transcription factors in Acer truncatum has not been reported. In this study, we conducted genome-wide identification and analysis of the WRKY gene family in A. truncatum, 54 WRKY genes were unevenly located on all 13 chromosomes of A. truncatum, the highest number was found in chromosomes 5. Phylogenetic relationships, gene structure, and conserved motif identification were constructed, and the results affirmed 54 AtruWRKY genes were divided into nine subgroup groups. Tissue species analysis of AtruWRKY genes revealed which were differently exhibited upregulation in flower, leaf, root, seed and stem, and the upregulation number were 23, 14, 34, 18, and 8, respectively. In addition, the WRKY genes expression in leaf under cold stress showed that more genes were significantly expressed under 0, 6 and 12 h cold stress. The results of this study provide a new insight the regulatory function of WRKY genes under abiotic and biotic stresses.

scholarly journals Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana

2016 ◽  
Vol 4 (4) ◽  
pp. 279 ◽  
Author(s):  
Shaiq Sultan ◽  
Muhammad Amjid Ali ◽  
Rana Muhammad Atif ◽  
Farrukh Azeem ◽  
Habibullah Nadeem ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Transcription Factors ◽  
Chromosomal Localization ◽  
Evolutionary Relationship ◽  
Wrky Transcription Factors ◽  
Specific Sequence ◽  
Multiple Sequence ◽  
Genome Wide Analysis ◽  
Functional Homology ◽  
Genome Wide

WRKY transcription factors are a class of DNA-binding proteins that bind with a specific sequence C/TTGACT/C known as W-Box found in promoters of genes which are regulated by these WRKYs. From previous studies, 43 different stress responsive WRKY transcription factors in Arabidopsis thaliana, identified and then categorized in three groups viz., abiotic, biotic and both of these stresses. A comprehensive genome wide analysis including chromosomal localization, gene structure analysis, multiple sequence alignment, phylogenetic analysis and promoter analysis of these WRKY genes was carried out in this study to determine the functional homology in Arabidopsis. This analysis led to the classification of these WRKY family members into 3 major groups and subgroups and showed evolutionary relationship among these groups on the base of their functional WRKY domain, chromosomal localization and intron/exon structure. The proposed groups of these stress responsive WRKY genes and annotation based on their position on chromosomes can also be explored to determine their functional homology in other plant species in relation to different stresses. The result of the present study provides indispensable genomic information for the stress responsive WRKY transcription factors in Arabidopsis and will pave the way to explain the precise role of various AtWRKYs in plant growth and development under stressed conditions.

scholarly journals Genome-Wide Analysis of C2H2 Zinc-Finger Family Transcription Factors and Their Responses to Abiotic Stresses in Poplar (Populus trichocarpa)

PLoS ONE ◽  
2015 ◽  
Vol 10 (8) ◽  
pp. e0134753 ◽  
Author(s):  
Quangang Liu ◽  
Zhanchao Wang ◽  
Xuemei Xu ◽  
Haizhen Zhang ◽  
Chenghao Li
Keyword(s):  
Transcription Factors ◽  
Zinc Finger ◽  
Abiotic Stresses ◽  
Populus Trichocarpa ◽  
C2h2 Zinc Finger ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide identification of Dof transcription factors possibly associated with internal browning of postharvest pineapple fruits

2019 ◽  
Vol 251 ◽  
pp. 80-87 ◽  
Author(s):  
Keqian Hong ◽  
Jiewen Xian ◽  
Zhiwei Jia ◽  
Xiaowan Hou ◽  
Lubin Zhang
Keyword(s):  
Transcription Factors ◽  
Genome Wide ◽  
Internal Browning ◽  
Dof Transcription Factors
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