An integrated RNA-Seq and physiological study reveals gene responses involving in the initial imbibition of seed germination in rice

2019 ◽  
Vol 90 (2) ◽  
pp. 249-263 ◽  
Author(s):  
Jia Zhao ◽  
Yongqi He ◽  
Xueying Li ◽  
Xianna Weng ◽  
Defeng Feng ◽  
...  
Keyword(s):  
Seed Germination ◽  
Physiological Study ◽  
Rna Seq

scholarly journals RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination

Data in Brief ◽  
2017 ◽  
Vol 14 ◽  
pp. 548-550 ◽  
Author(s):  
Nur Diyana Kamal Azlan ◽  
Mohd Noor Mat Isa ◽  
Zamri Zainal
Keyword(s):  
Seed Germination ◽  
Rna Seq ◽  
Garcinia Mangostana

scholarly journals RNA-Seq Study Reveals AP2-Domain-Containing Signalling Regulators Involved in Initial Imbibition of Seed Germination in Rice

Rice Science ◽  
2020 ◽  
Vol 27 (4) ◽  
pp. 302-314
Author(s):  
He Yongqi ◽  
Zhao Jia ◽  
Feng Defeng ◽  
Huang Zhibo ◽  
Liang Jiaming ◽  
...  
Keyword(s):  
Seed Germination ◽  
Rna Seq ◽  
Ap2 Domain

scholarly journals De Novo Assembly and Characterization of the Seed Germination Transcriptomes of Sicyos angulatus

2021 ◽  
Vol 26 (01) ◽  
pp. 31-38
Author(s):  
Helong Si
Keyword(s):  
Signal Transduction ◽  
Seed Germination ◽  
Invasive Plant ◽  
De Novo ◽  
Expression Profiles ◽  
Signal Transduction Pathway ◽  
Pairwise Comparison ◽  
Rna Seq ◽  
Sequencing Data ◽  
Meristem Development

Sicyos angulatus has become an important invasive plant exhibiting good ecological adaptability and strong competitive ability. However, studies on this plant at the molecular level are limited by a lack of sequencing data. The present study obtained transcriptome sequences and gene expression profiles using RNA-Seq during S. angulatus seed germination. In total, RNA-Seq generated 491,967,468 reads, which were de novo assembled and 127,874 unigenes with N50 length of 807 bp. About 34.9% of the unigenes (44,660) were annotated against the protein databases, and 35,176 coding sequences were determined. During S. angulatus seed germination, over 127,860 unigenes were expressed and 66,664 unigenes differentially expressed genes (DEGs), among which 8919 DEGs were similar in pairwise comparison. Gene Ontology (GO) analysis of DEGs revealed that genes related to post-embryonic development, meristem development, and photosynthesis were enriched. In addition, the GO term “plant hormone signal transduction pathway” was also enriched in the DEGs. Important changes in genes expression related to auxin and gibberellin signal transduction might possibly be associated with S. angulatus seed germination. The findings of this study provide a foundation for research on S. angulatus that may contribute to prevent further invasion of this plant, consequently protecting the environment. © 2021 Friends Science Publishers

scholarly journals The Rice Small Auxin-Up RNA Gene OsSAUR33 Regulates Seed Vigor via Sugar Pathway during Early Seed Germination

2021 ◽  
Vol 22 (4) ◽  
pp. 1562
Author(s):  
Jia Zhao ◽  
Wenjun Li ◽  
Shan Sun ◽  
Liling Peng ◽  
Zhibo Huang ◽  
...  
Keyword(s):  
Seed Germination ◽  
Sugar Content ◽  
Soluble Sugar ◽  
Seedling Emergence ◽  
Seed Vigor ◽  
Rna Seq ◽  
Sugar Signaling ◽  
Early Germination ◽  
Germinating Seeds ◽  
Insight Into

Seed vigor affects seed germination and seedling emergence, and therefore is an important agronomic trait in rice. Small auxin-up RNAs (SAURs) function in a range of developmental processes, but their role in seed vigor remains unclear. Here, we observed that disruption of OsSAUR33 resulted in reduced germination rates and low seed uniformity in early germination. Expression of OsSAUR33 was higher in mature grains and early germinating seeds. RNA-seq analysis revealed that OsSAUR33 modulated seed vigor by affecting the mobilization of stored reserves during germination. Disruption of OsSAUR33 increased the soluble sugar content in dry mature grains and seeds during early germination. OsSAUR33 interacted with the sucrose non-fermenting-1-related protein kinase OsSnRK1A, a regulator of the sugar signaling pathway, which influences the expression of sugar signaling-related genes during germination. Disruption of OsSAUR33 increased sugar-sensitive phenotypes in early germination, suggesting OsSAUR33 likely affects seed vigor through the sugar pathway. One elite haplotype of OsSAUR33 associated with higher seed vigor was identified mainly in indica accessions. This study provides insight into the effects of OsSAUR33 on seed vigor in rice.

beta-Glucosidase activities and HCN liberation in unimbibed and imbibed seeds, and the induction of cocklebur seed germination by cyanogenic glycosides

1991 ◽  
Vol 83 (1) ◽  
pp. 34-40 ◽  
Author(s):  
Yohji Esashi ◽  
Shinichi Matsuyama ◽  
Hiroki Ashino ◽  
Maria Ogasawara ◽  
Ryo Hasegawa
Keyword(s):  
Seed Germination ◽  
Cyanogenic Glycosides ◽  
Beta Glucosidase

Allelopathic effect of cumin (Cuminum cyminum L.) on seed germination of three weeds

Planta Medica ◽  
2011 ◽  
Vol 77 (12) ◽  
Author(s):  
A Soleymanifard ◽  
R Naseri ◽  
A Mirzaei ◽  
H Naserirad
Keyword(s):  
Seed Germination ◽  
Allelopathic Effect ◽  
Cuminum Cyminum

Effects of pre-chilling, incubation temperature and light on seed germination of Saponaria officinalis

Planta Medica ◽  
2015 ◽  
Vol 81 (16) ◽  
Author(s):  
YA Jeon ◽  
HS Lee ◽  
ES Park ◽  
YY Lee ◽  
JS Sung ◽  
...  
Keyword(s):  
Seed Germination ◽  
Incubation Temperature ◽  
Saponaria Officinalis

IMPACT OF FERTILIZERS APPLICATION ON SEED GERMINATION AND SEEDLING GROWTH OF VIGNA RADIATA

2018 ◽  
Vol 24 (2) ◽  
Author(s):  
SUPRIYA DIXIT ◽  
R. K. GUPTA
Keyword(s):  
Seed Germination ◽  
Leaf Area ◽  
Seedling Growth ◽  
Vigna Radiata ◽  
Agricultural Research ◽  
Dry Weight ◽  
Fertilizer Application ◽  
Research Field ◽  
Chemical Fertilizer ◽  
Seedling Length

Currently, a real challenge for the workers in the agricultural research field is to stop or reduce the use of expensive agrochemicals/ chemical fertilizers which are hazardous to the environment as well as human health. Present study was aimed to improve the growth and obtain optimum yield of Vigna crop with eco-friendly, non-toxic way and to reduce the use of agrochemical/chemical fertilizer application in agricultural activities. A pot experiment was conducted to study the effect of chemical fertilizer (DAP) and biofertilizer ( Rhizobium strain) separately and in combination on seed germination and seedling growth (at 30 days) based on morphological parameters such as seedling length (cm), fresh weight (g), dry weight (g) and leaf area (cm)2 of Vigna radiata (L.) Wilczek. After one month (30 Days) observations, it was found that seedling length, fresh and dry weights and leaf area were maximum in T4 and minimum in T15, T7 and T8 favored improved seedling length and leaf area whereas T7, T8, and T9 favored improved fresh and dry weights as compared to control.

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