scholarly journals Accelerating public sector rice breeding with high-density KASP markers derived from whole genome sequencing of indica rice

2018 ◽  
Vol 38 (4) ◽  
Author(s):  
Katherine A. Steele ◽  
Mark J. Quinton-Tulloch ◽  
Resham B. Amgai ◽  
Rajeev Dhakal ◽  
Shambhu P. Khatiwada ◽  
...  
Keyword(s):  
Public Sector ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Indica Rice ◽  
High Density ◽  
Whole Genome ◽  
Rice Breeding ◽  
Kasp Markers

scholarly journals Whole Genome Sequencing and Analysis of Godawee, a Salt Tolerant Indica Rice Variety

2017 ◽  
Vol 05 (01) ◽  
Author(s):  
Sanjeewa Singhabahu ◽  
Chathura Wijesinghe ◽  
Dilini Gunawardana ◽  
Muditha D Senarath Yapa ◽  
Madushani Kannangara ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Indica Rice ◽  
Rice Variety ◽  
Whole Genome ◽  
Salt Tolerant

scholarly journals Local Ancestry Prediction with PyLAE

2020 ◽  
Author(s):  
Alexander Smetanin ◽  
Nikita Moshkov ◽  
Tatiana V. Tatarinova
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Computational Efficiency ◽  
Source Code ◽  
High Density ◽  
Whole Genome Sequencing Data ◽  
Whole Genome ◽  
Sequencing Data ◽  
Local Ancestry ◽  
A Genome

AbstractSummaryWe developed PyLAE - a new tool for determining local ancestry along a genome using whole-genome sequencing data or high-density genotyping experiments. PyLAE can process an arbitrarily large number of ancestral populations (with or without an informative prior). Since PyLAE does not involve estimation of many parameters, it can process thousands of genomes within a day. Computational efficiency, straightforward presentation of results, and an ease of installation makes PyLAE a useful tool to study admixed populations.Availability and implementationThe source code and installation manual are available at https://github.com/smetam/pylae.

scholarly journals Construction of a high-density genetic map with whole genome sequencing in Nicotiana tabacum L

Genomics ◽  
2020 ◽  
Vol 112 (2) ◽  
pp. 2028-2033
Author(s):  
Zhijun Tong ◽  
Juhong Zhou ◽  
Zhihui Xiu ◽  
Fangchan Jiao ◽  
Yafei Hu ◽  
...  
Keyword(s):  
Nicotiana Tabacum ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genetic Map ◽  
High Density ◽  
Whole Genome ◽  
Nicotiana Tabacum L

scholarly journals Whole genome sequencing and analysis of Swarna, a widely cultivated indica rice variety with low glycemic index

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Pasupathi Rathinasabapathi ◽  
Natarajan Purushothaman ◽  
Ramprasad VL ◽  
Madasamy Parani
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Glycemic Index ◽  
Indica Rice ◽  
Rice Variety ◽  
Whole Genome ◽  
Low Glycemic Index

Utility of Whole Genome Sequencing in diagnosing complex disorders: lesson from renal tubular disorders

2018 ◽  
Author(s):  
Mark Stevenson ◽  
Alistair T Pagnamenta ◽  
Heather G Mack ◽  
Judith A Savige ◽  
Kate E Lines ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Whole Genome ◽  
Complex Disorders ◽  
Tubular Disorders ◽  
Renal Tubular Disorders ◽  
Renal Tubular

0306 Exploring the feasibility of using copy number variants as genetic markers through large-scale whole genome sequencing experiments

2016 ◽  
Vol 94 (suppl_5) ◽  
pp. 146-146
Author(s):  
D. M. Bickhart ◽  
L. Xu ◽  
J. L. Hutchison ◽  
J. B. Cole ◽  
D. J. Null ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genetic Markers ◽  
Genome Sequencing ◽  
Copy Number ◽  
Large Scale ◽  
Copy Number Variants ◽  
Whole Genome
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