scholarly journals Characterization of the recent clinical isolates of Indian Kala-azar patients by RAPD-PCR method

2011 ◽  
Vol 35 (2) ◽  
pp. 116-122 ◽  
Author(s):  
Supriya Khanra ◽  
Subir K. Bandopadhyay ◽  
Priyanka Chakraborty ◽  
Sanchita Datta ◽  
Dinesh Mondal ◽  
...  
Author(s):  
Ojesh Pokhrel ◽  
Keshav Rai ◽  
Narayan Raj Bhattarai ◽  
Suman Rijal ◽  
Arpana Rijal ◽  
...  

Post-kala-azar dermal leishmaniasis (PKDL) is a skin manifestation of visceral leishmaniasis (VL) which develops after apparent cure in some patients. PKDL is considered as the potential reservoir for the VL infection. Molecular epidemiological characterization of L. donovani isolates obtained from VL and PKDL isolates is essentially required in order to understand the transmission dynamics of the VL infection. To date, genetic variation among the VL and PKDL L. donovani isolates was not fully elucidated. Therefore, 14 clinical isolates from VL and 4 clinical isolates from PKDL were speciated by hsp70 and rDNA genes. Further characterization of L. donovani by haspB PCR demonstrates two different genotypes. All PKDL isolates have the same genetic structure. kDNA PCR-RFLP assay revealed 18 different genotypes; however, structural analysis showed the two distinct kDNA genotype population (k = 2). The kDNA fingerprint patterns of parasites from hilly districts were clustered separately from low-land districts. Therefore, further study with a large number of samples is urgently required for systematic characterization of the clinical isolates to track the molecular epidemiology of the Leishmania donovani causing VL and the role of PKDL as a reservoir.


2018 ◽  
Vol 17 (6) ◽  
pp. 159-166
Author(s):  
Halina Kurzawińska ◽  
Stanisław Mazur ◽  
Małgorzata Nadziakiewicz ◽  
Jacek Nawrocki

The aim of this study was to determine whether the weeds accompanying potato crops can be a source of Alternaria spp. causing Alternaria leaf blight and to determine the genetic similarities of Alternaria alternata isolates infecting selected weeds: Chenopodium album, Cirsium arvense and tested potato cultivar. Three-year field experiment was conducted on the potato cultivar ‘Vineta N’. The isolates were classified into different species on the basis of macro- and microscopic features. In each year of the study, A. alternata dominated among the isolated fungi colonizing the leaves of potato plants and the selected weeds. The genetic similarities of A. alternata isolates was determined by the RAPD-PCR method. Tested genetic forms of A. alternata were closely related; only small differences in the pattern of the separated amplification products was evidenced. The dominance of A. alternata on the weeds accompanying potato crops suggests that if weed infestation is extensive, the pathogen is very likely to spread and its population to increase.


2020 ◽  
Vol 13 (2) ◽  
pp. 327
Author(s):  
R Bawazeer ◽  
M Algoribi ◽  
T Abujamel ◽  
L Okdah ◽  
M Alzayer ◽  
...  

2012 ◽  
Vol 2012 ◽  
pp. 1-5 ◽  
Author(s):  
Alberto J. Valencia-Botín ◽  
María E. Cisneros-López

Wheat is affected by some pathovars ofPseudomonas syringaeand by otherPseudomonasspecies. Of these,P. syringaepv.syringaeis the major one responsible for reduction. Recent studies have been made to characterize and identify the pathogen and to determine its aggressiveness and the pattern of colonization in seed and its effects on seed yield, yield components, and source-sink relationships during postanthesis. It was found that the reduction in the aerial biomass production is the best way to evaluate the aggressiveness of this bacterium, and the spray inoculation is good tool to make evaluations at seedling stage. The characterization of bacteria fingerprintings with molecular markers such as RAPD-PCR, ERIC, and REP-PCR is available. Genomic evolution has been elucidated with next-generation genome sequencing. Also, the colonization pattern shows that, early on, microcolonies are frequently detected in the aleurone layer, later in the endosperm and finally close to the crease and even in some cells of the embryo itself. In the wheat cultivars Seri M82 and Rebeca F2000 seed yield and its components are negatively affected. In general,P. syringaepv.syringaereduces the plant height, seed yield, and yield components, as well as the growth of most organs. When this bacterium attacks, the stems are the predominant sink organs and the leaf laminae and panicles are the predominant source organs.


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