Searching for hidden periodicities in biological time series

1991 ◽  
Vol 12 (5) ◽  
pp. 710
Author(s):  
David Carr
Author(s):  
Z.. Ismail ◽  
N. H. Ramli ◽  
Z.. Ibrahim ◽  
T. A. Majid ◽  
G. Sundaraj ◽  
...  

In this chapter, a study on the effects of transforming wind speed data, from a time series domain into a frequency domain via Fast Fourier Transform (FFT), is presented. The wind data is first transformed into a stationary pattern from a non-stationary pattern of time series data using statistical software. This set of time series is then transformed using FFT for the main purpose of the chapter. The analysis is done through MATLAB software, which provides a very useful function in FFT algorithm. Parameters of engineering significance such as hidden periodicities, frequency components, absolute magnitude and phase of the transformed data, power spectral density and cross spectral density can be obtained. Results obtained using data from case studies involving thirty-one weather stations in Malaysia show great potential for application in verifying the current criteria used for design practices.


2020 ◽  
pp. 429-457
Author(s):  
Daniel P. Redmond ◽  
Helen C. Sing ◽  
Frederick W. Hegge

Nonlinear forecasting was used to predict the time evolution of fluctuating concentrations of dissolved oxygen in the peroxidase-oxidase reaction. This reaction entails the oxidation of NADH with molecular oxygen as the electron acceptor. Depending upon the experimental conditions, either regular or highly irregular oscillations obtain. Previous work suggests that the latter fluctuations are almost certainly chaotic. In either case, the dynamics contain multiple timescales, which fact results in an uneven distribution of points in the phase space. Such ‘nonuniformity,’ as it is called, is a rock on which conventional methods for analysing chaotic time series often founder. The results of the present study are as follows. 1. Short-term forecasting with local linear predictors yields results that are consistent with a hypothesis of low-dimensional chaos. 2. Most of the evidence for nonlinear determinism disappears upon the addition of small amounts of observational error. 3. It is essentially impossible to make predictions over time intervals longer than the average period of oscillation for time series subject to continuous and frequent sampling. 4. Far more effective forecasting is possible for points on Poincare sections. 5. An alternative means for improving forecasting efficacy using the continuous data is to include a second variable (NADH concentration) in the analysis. Since non-uniformity is common in biological time series, we conclude that the application of nonlinear forecasting to univariate time series requires care both in implementation and interpretation.


Author(s):  
Steffen Schulz ◽  
Felix-Constantin Adochiei ◽  
Ioana-Raluca Edu ◽  
Rico Schroeder ◽  
Hariton Costin ◽  
...  

Recently, methods have been developed to analyse couplings in dynamic systems. In the field of medical analysis of complex cardiovascular and cardiorespiratory systems, there is growing interest in how insights may be gained into the interaction between regulatory mechanisms in healthy and diseased persons. The couplings within and between these systems can be linear or nonlinear. However, the complex mechanisms involved in cardiovascular and cardiorespiratory regulation very likely interact with each other in a nonlinear way. Recent advances in nonlinear dynamics and information theory have allowed the multivariate study of information transfer between time series. They therefore might be able to provide additional diagnostic and prognostic information in medicine and might, in particular, be able to complement traditional linear coupling analysis techniques. In this review, we describe the approaches (Granger causality, nonlinear prediction, entropy, symbolization, phase synchronization) most commonly applied to detect direct and indirect couplings between time series, especially focusing on nonlinear approaches. We will discuss their capacity to quantify direct and indirect couplings and the direction (driver–response relationship) of the considered interaction between different biological time series. We also give their basic theoretical background, their basic requirements for application, their main features and demonstrate their usefulness in different applications in the field of cardiovascular and cardiorespiratory coupling analyses.


1991 ◽  
Vol 48 (12) ◽  
pp. 2296-2306 ◽  
Author(s):  
Daniel M. Ware ◽  
Richard E. Thomson

The biomass of pelagic fish in the Coastal Upwelling Domain off the west coast of North America decreased by a factor of 5 in the first half of this century. We assemble several physical and biological time series spanning this period to determine what may have caused this decline in productivity. Based on an observed link between time series of the coastal wind and primary production, we conclude that there was a strong relaxation in wind-induced upwelling and primary production between 1916 and 1942 off southern California. The fact that the individual biomasses of the dominant pelagic fish species tend to rise and fall in phase through the sediment record off southern California is consistent with our belief that these species are responding to a long-period (40–60 yr) oscillation in primary and secondary production, which, in turn, is being forced by a long-period oscillation in wind-induced upwelling. Our extended sardine recruitment time series indicates that there is a nonlinear relationship between Pacific sardine (Sardinops sagax) recruitment and upwelling and suggests that optimal recruitment occurs when the wind speed during the first few months of life averages 7–8 m/s.


2015 ◽  
Vol 10 (1) ◽  
pp. 729-737
Author(s):  
Khadidja Bensouici ◽  
Zaher Mohdeb

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