Free energy and kinetics of cAMP permeation through connexin26 via applied voltage and milestoning

Author(s):  
Wenjuan Jiang ◽  
Yi-Chun Lin ◽  
Wesley Botello-Smith ◽  
Jorge Contreras ◽  
Andrew L. Harris ◽  
...  
2011 ◽  
Vol 324 ◽  
pp. 166-169 ◽  
Author(s):  
Farah Zeitouni ◽  
Gehan El-Subruiti ◽  
Ghassan Younes ◽  
Mohammad Amira

The rate of aquation of bromopentaammine cobalt(III) ion in the presence of different types of dicarboxylate solutions containing tert-butanol (40% V/V) have been measured spectrophotometrically at different temperatures (30-600°C) in the light of the effects of ion-pairing on reaction rates and mechanism. The thermodynamic and extrathermodynamic parameters of activation have been calculated and discussed in terms of solvent effect on the ion-pair aquation reaction. The free energy of activation ∆Gip* is more or less linearly varied among the studied dicarboxylate ion-pairing ligands indicating the presence of compensation effect between ∆Hip* and ∆Sip*. Comparing the kip values with respect of different buffers at 40% of ter-butanol is introduced.


1956 ◽  
Vol 34 (5) ◽  
pp. 473-490 ◽  
Author(s):  
K. A. Jackson ◽  
Bruce Chalmers

The kinetic theory of melting and freezing is developed from consideration of atom movements at an interface between solid and liquid. The equations developed are shown to have the same form as the corresponding thermodynamic equations. The homogeneous nucleation of a solid phase in a liquid is then considered from the point of view of this theory. Agreement with experimental observation is obtained on the following points. (1) The supercooling at which homogeneous nucleation occurs is proportional to the absolute equilibrium temperature. (2) The surface free energy per atom used in the quasi-thermodynamic treatment of nucleation should be equal to one-half the latent heat per atom. (3) The amount of liquid supercooled has a very small effect on the temperature at which homogeneous nucleation occurs.


2007 ◽  
Vol 26-28 ◽  
pp. 1307-1310 ◽  
Author(s):  
Sang Hwan Lee ◽  
Kyung Jong Lee

It is generally accepted that Si promotes kinetics of polygonal ferrite due to thermodynamic factors such as Ae3 and maximum amount of ferrite formed. However, in this study, it was found that the difference between the measured rates of ferrite formation in C-Mn steel and Si added steel was much larger than that expected considering only thermodynamic factors. The classical nucleation theory with pillbox model was adopted to figure out what is the most controlling factor in formation of ferrite. The volume free energy change was calculated by use of the dilute solution model. The diffusivity of carbon (DC) was formulated as functions of C, Mn and Si by using experimental data. It was found that the volume free energy change was still predominant but the kinetic factors such as interfacial energy and the diffusivity of carbon by addition of Si were not negligible at lower undercooling. However, with increasing undercooling, the diffusivity of C was the most effective on the ferrite kinetics, though the ambiguity of treating interfacial energy was not yet clear.


2016 ◽  
Vol 3 (2) ◽  
pp. 150379 ◽  
Author(s):  
Brian Chapman ◽  
Denis Loiselle

We use the results of recent publications as vehicles with which to discuss the thermodynamics of the proton-driven mitochondrial F o F 1 -ATP synthase, focusing particularly on the possibility that there may be dissociation between rotatory steps and ATP synthesis/hydrolysis. Such stoichiometric ‘slippage’ has been invoked in the literature to explain observed non-ideal behaviour. Numerical solution of the Rate Isotherm (the kinetic equivalent of the more fundamental Probability Isotherm) suggests that such ‘slippage’ is an unlikely explanation; instead, we suggest that the experimental results may be more consistent with damage to the enzyme caused by its isolation from the biomembrane and its experimental fixation, resulting in non-physiological friction within the enzyme's rotary mechanism. We emphasize the unavoidable constraint of the Second Law as instantiated by the obligatory dissipation of Gibbs Free Energy if the synthase is to operate at anything other than thermodynamic equilibrium. We use further numerical solution of the Rate Isotherm to demonstrate that there is no necessary association of low thermodynamic efficiency with high metabolic rates in a bio-world in which the dominating mechanism of metabolic control is multifactorial enzyme activation.


2015 ◽  
Vol 39 (8) ◽  
pp. 6130-6140 ◽  
Author(s):  
Mohammad Mahdi Abolhasani

Is it possible to determine the state of phase separation using the free energy of folding parameter?


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