Systematic identification and expression analysis of the Sox gene family in spotted sea bass (Lateolabrax maculatus)

2021 ◽  
Vol 38 ◽  
pp. 100817
Author(s):  
Bingyu Li ◽  
Yuan Tian ◽  
Haishen Wen ◽  
Xin Qi ◽  
Lingyu Wang ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Sea Bass ◽  
Lateolabrax Maculatus ◽  
Sox Gene ◽  
Systematic Identification

Analysis of the Sox gene family in the European sea bass (Dicentrarchus labrax)

2004 ◽  
Vol 137 (2) ◽  
pp. 279-284 ◽  
Author(s):  
Malyka Galay-Burgos ◽  
Lynda Llewellyn ◽  
Constantinos C Mylonas ◽  
Adelino V.M Canario ◽  
Silvia Zanuy ◽  
...  
Keyword(s):  
Gene Family ◽  
Dicentrarchus Labrax ◽  
Sea Bass ◽  
European Sea Bass ◽  
Sox Gene

Spotted Sea Bass (Lateolabrax maculatus) cftr, nkcc1a, nkcc1b and nkcc2: Genome-Wide Identification, Characterization and Expression Analysis Under Salinity Stress

2019 ◽  
Vol 18 (6) ◽  
pp. 1470-1480 ◽  
Author(s):  
Kaiqiang Zhang ◽  
Xiaoyan Zhang ◽  
Haishen Wen ◽  
Xin Qi ◽  
Hongying Fan ◽  
...  
Keyword(s):  
Salinity Stress ◽  
Expression Analysis ◽  
Sea Bass ◽  
Genome Wide ◽  
Lateolabrax Maculatus

Genome-wide identification and transcriptome-based expression analysis of sox gene family in the Japanese flounder Paralichthys olivaceus

2018 ◽  
Vol 36 (5) ◽  
pp. 1731-1745 ◽  
Author(s):  
Haiyang Yu ◽  
Xinxin Du ◽  
Xiaojing Li ◽  
Jiangbo Qu ◽  
He Zhu ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Paralichthys Olivaceus ◽  
Japanese Flounder ◽  
Genome Wide ◽  
Sox Gene

Identification, expression analysis, and functional characterization of motilin and its receptor in spotted sea bass (Lateolabrax maculatus)

2019 ◽  
Vol 277 ◽  
pp. 38-48 ◽  
Author(s):  
Yangyang Zhou ◽  
Xin Qi ◽  
Haishen Wen ◽  
Kaiqiang Zhang ◽  
Xiaoyan Zhang ◽  
...  
Keyword(s):  
Expression Analysis ◽  
Functional Characterization ◽  
Sea Bass ◽  
Lateolabrax Maculatus

Systematic Identification, Evolution and Expression Analysis of the SPL Gene Family in Sugarcane (Saccharum spontaneum)

2021 ◽  
Author(s):  
Xiaomin Feng ◽  
Yongjun Wang ◽  
Nannan Zhang ◽  
Xiangbo Zhang ◽  
Jiayun Wu ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Saccharum Spontaneum ◽  
Systematic Identification ◽  
Spl Gene

scholarly journals Slc4 Gene Family in Spotted Sea Bass (Lateolabrax maculatus): Structure, Evolution, and Expression Profiling in Response to Alkalinity Stress and Salinity Changes

Genes ◽  
2020 ◽  
Vol 11 (11) ◽  
pp. 1271
Author(s):  
Ling-Yu Wang ◽  
Yuan Tian ◽  
Hai-Shen Wen ◽  
Peng Yu ◽  
Yang Liu ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Patterns ◽  
Purifying Selection ◽  
Sea Bass ◽  
Duplication Event ◽  
Structure Evolution ◽  
Genome Duplication Event ◽  
Physiological Processes ◽  
Lateolabrax Maculatus ◽  
Solute Carrier

The solute carrier 4 (SLC4) family is a class of cell membranes transporters involved in base transport that plays crucial roles in diverse physiological processes. In our study, 15 slc4 genes were identified and annotated in spotted sea bass, including five members of Cl−/HCO3− exchangers, eight genes coding Na+-dependent HCO3− transporters, and two copies of Na+-coupled borate transporters. The gene sequence and structure, chromosomal and syntenic arrangement, phylogenetic and evolution profiles were analyzed. Results showed that the slc4 gene in teleosts obviously expanded compared with higher vertebrates, arising from teleost-specific whole genome duplication event. Most gene sites of slc4 in spotted sea bass were under strong purifying selection during evolution, while positive selection sites were only detected in slc4a1b, slc4a8, and slc4a10b. Additionally, qRT-PCR results showed that different slc4 genes exhibited distinct branchial expression patterns after alkalinity and salinity stresses, of which the strongly responsive members may play essential roles during these physiological processes. Our study provides the systemic overview of the slc4 gene family in spotted sea bass and enables a better understanding for the evolution of this family and further deciphering the biological roles in maintaining ion and acid–base homeostasis in teleosts.

scholarly journals Identification, expression analysis, and functional characterization of ghrelin and its receptors in spotted sea bass (Lateolabrax maculatus)

2020 ◽  
Vol 2 (4) ◽  
pp. 349-359
Author(s):  
Peng Yu ◽  
Yangyang Zhou ◽  
Xin Qi ◽  
Hongying Fan ◽  
Kaiqiang Zhang ◽  
...  
Keyword(s):  
Expression Analysis ◽  
Functional Characterization ◽  
Sea Bass ◽  
Lateolabrax Maculatus

scholarly journals Genome-wide identification of cyclin-dependent kinase (CDK) genes affecting adipocyte differentiation in cattle

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Cuili Pan ◽  
Zhaoxiong Lei ◽  
Shuzhe Wang ◽  
Xingping Wang ◽  
Dawei Wei ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Adipocyte Differentiation ◽  
Bos Taurus ◽  
Adipogenic Differentiation ◽  
Critical Role ◽  
Bos Indicus ◽  
Specific Expression ◽  
Genome Wide ◽  
A Genome

Abstract Background Cyclin-dependent kinases (CDKs) are protein kinases regulating important cellular processes such as cell cycle and transcription. Many CDK genes also play a critical role during adipogenic differentiation, but the role of CDK gene family in regulating bovine adipocyte differentiation has not been studied. Therefore, the present study aims to characterize the CDK gene family in bovine and study their expression pattern during adipocyte differentiation. Results We performed a genome-wide analysis and identified a number of CDK genes in several bovine species. The CDK genes were classified into 8 subfamilies through phylogenetic analysis. We found that 25 bovine CDK genes were distributed in 16 different chromosomes. Collinearity analysis revealed that the CDK gene family in Bos taurus is homologous with Bos indicus, Hybrid-Bos taurus, Hybrid Bos indicus, Bos grunniens and Bubalus bubalis. Several CDK genes had higher expression levels in preadipocytes than in differentiated adipocytes, as shown by RNA-seq analysis and qPCR, suggesting a role in the growth of emerging lipid droplets. Conclusion In this research, 185 CDK genes were identified and grouped into eight distinct clades in Bovidae, showing extensively homology. Global expression analysis of different bovine tissues and specific expression analysis during adipocytes differentiation revealed CDK4, CDK7, CDK8, CDK9 and CDK14 may be involved in bovine adipocyte differentiation. The results provide a basis for further study to determine the roles of CDK gene family in regulating adipocyte differentiation, which is beneficial for beef quality improvement.

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