Chemical approaches for investigating site-specific protein S-fatty acylation

2021 ◽  
Vol 65 ◽  
pp. 109-117
Author(s):  
Emma H. Garst ◽  
Tandrila Das ◽  
Howard C. Hang
2016 ◽  
Vol 113 (16) ◽  
pp. 4302-4307 ◽  
Author(s):  
Avital Percher ◽  
Srinivasan Ramakrishnan ◽  
Emmanuelle Thinon ◽  
Xiaoqiu Yuan ◽  
Jacob S. Yount ◽  
...  

Fatty acylation of cysteine residues provides spatial and temporal control of protein function in cells and regulates important biological pathways in eukaryotes. Although recent methods have improved the detection and proteomic analysis of cysteine fatty (S-fatty) acylated proteins, understanding how specific sites and quantitative levels of this posttranslational modification modulate cellular pathways are still challenging. To analyze the endogenous levels of protein S-fatty acylation in cells, we developed a mass-tag labeling method based on hydroxylamine-sensitivity of thioesters and selective maleimide-modification of cysteines, termed acyl-PEG exchange (APE). We demonstrate that APE enables sensitive detection of protein S-acylation levels and is broadly applicable to different classes of S-palmitoylated membrane proteins. Using APE, we show that endogenous interferon-induced transmembrane protein 3 is S-fatty acylated on three cysteine residues and site-specific modification of highly conserved cysteines are crucial for the antiviral activity of this IFN-stimulated immune effector. APE therefore provides a general and sensitive method for analyzing the endogenous levels of protein S-fatty acylation and should facilitate quantitative studies of this regulated and dynamic lipid modification in biological systems.


2020 ◽  
Vol 56 (89) ◽  
pp. 13880-13883
Author(s):  
Yumeng Li ◽  
Shushu Wang ◽  
Yanchi Chen ◽  
Manjia Li ◽  
Xiaoshu Dong ◽  
...  

Chemically installed fatty-acylation recapitulates the function of S-palmitoylation in regulating protein membrane affinity and signaling in live cells.


Biochemistry ◽  
2016 ◽  
Vol 55 (5) ◽  
pp. 751-761 ◽  
Author(s):  
Soichiro Akashi ◽  
Khandaker Ahtesham Ahmed ◽  
Tomohiro Sawa ◽  
Katsuhiko Ono ◽  
Hiroyasu Tsutsuki ◽  
...  

2018 ◽  
Author(s):  
Daniel D. Brauer ◽  
Emily C. Hartman ◽  
Daniel L.V. Bader ◽  
Zoe N. Merz ◽  
Danielle Tullman-Ercek ◽  
...  

<div> <p>Site-specific protein modification is a widely-used strategy to attach drugs, imaging agents, or other useful small molecules to protein carriers. N-terminal modification is particularly useful as a high-yielding, site-selective modification strategy that can be compatible with a wide array of proteins. However, this modification strategy is incompatible with proteins with buried or sterically-hindered N termini, such as virus-like particles like the well-studied MS2 bacteriophage coat protein. To assess VLPs with improved compatibility with these techniques, we generated a targeted library based on the MS2-derived protein cage with N-terminal proline residues followed by three variable positions. We subjected the library to assembly, heat, and chemical selections, and we identified variants that were modified in high yield with no reduction in thermostability. Positive charge adjacent to the native N terminus is surprisingly beneficial for successful extension, and over 50% of the highest performing variants contained positive charge at this position. Taken together, these studies described nonintuitive design rules governing N-terminal extensions and identified successful extensions with high modification potential.</p> </div>


2016 ◽  
Vol 14 (21) ◽  
pp. 4817-4823 ◽  
Author(s):  
Roman Meledin ◽  
Sachitanand M. Mali ◽  
Sumeet K. Singh ◽  
Ashraf Brik

We report a strategy for site-specific protein ubiquitination using dehydroalanine (Dha) chemistry for the preparation of ubiquitin conjugates bearing a very close mimic of the native isopeptide bond.


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