scholarly journals MALINI (Machine Learning in NeuroImaging): A MATLAB toolbox for aiding clinical diagnostics using resting-state fMRI data

Data in Brief ◽  
2020 ◽  
Vol 29 ◽  
pp. 105213 ◽  
Author(s):  
Pradyumna Lanka ◽  
D. Rangaprakash ◽  
Sai Sheshan Roy Gotoor ◽  
Michael N. Dretsch ◽  
Jeffrey S. Katz ◽  
...  
2021 ◽  
Vol 352 ◽  
pp. 109084
Author(s):  
Valeria Saccà ◽  
Alessia Sarica ◽  
Andrea Quattrone ◽  
Federico Rocca ◽  
Aldo Quattrone ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
Yan Tong ◽  
Xin Huang ◽  
Chen-Xing Qi ◽  
Yin Shen

PurposeTo explore the intrinsic functional connectivity (FC) alteration of the primary visual cortex (V1) between individuals with iridocyclitis and healthy controls (HCs) by the resting-state functional magnetic resonance imaging (fMRI) technique, and to investigate whether FC findings be used to differentiate patients with iridocyclitis from HCs.MethodsTwenty-six patients with iridocyclitis and twenty-eight well-matched HCs were recruited in our study and underwent resting-state fMRI examinations. The fMRI data were analyzed by Statistical Parametric Mapping (SPM12), Data Processing and Analysis for Brain Imaging (DPABI), and Resting State fMRI Data Analysis Toolkit (REST) software. Differences in FC signal values of the V1 between the individuals with iridocyclitis and HCs were compared using independent two-sample t-tests. Significant differences in FC between two groups were chosen as classification features for distinguishing individuals with iridocyclitis from HCs using a support vector machine (SVM) classifier that involved machine learning. Classifier performance was evaluated using permutation test analysis.ResultsCompared with HCs, patients with iridocyclitis displayed significantly increased FC between the left V1 and left cerebellum crus1, left cerebellum 10, bilateral inferior temporal gyrus, right hippocampus, and left superior occipital gyrus. Moreover, patients with iridocyclitis displayed significantly lower FC between the left V1 and both the bilateral calcarine and bilateral postcentral gyrus. Patients with iridocyclitis also exhibited significantly higher FC values between the right V1 and left cerebellum crus1, bilateral thalamus, and left middle temporal gyrus; while they displayed significantly lower FC between the right V1 and both the bilateral calcarine and bilateral postcentral gyrus (voxel-level P<0.01, Gaussian random field correction, cluster-level P<0.05). Our results showed that 63.46% of the participants were correctly classified using the leave-one-out cross-validation technique with an SVM classifier based on the FC of the left V1; and 67.31% of the participants were correctly classified based on the FC of the right V1 (P<0.001, non-parametric permutation test).ConclusionPatients with iridocyclitis displayed significantly disturbed FC between the V1 and various brain regions, including vision-related, somatosensory, and cognition-related regions. The FC variability could distinguish patients with iridocyclitis from HCs with substantial accuracy. These findings may aid in identifying the potential neurological mechanisms of impaired visual function in individuals with iridocyclitis.


Author(s):  
Svyatoslav Vergun ◽  
Alok S. Deshpande ◽  
Timothy B. Meier ◽  
Jie Song ◽  
Dana L. Tudorascu ◽  
...  

IEEE Access ◽  
2021 ◽  
pp. 1-1
Author(s):  
Mirza Naveed Shahzad ◽  
Haider Ali ◽  
Tanzila Saba ◽  
Amjad Rehman ◽  
Hoshang Kolivand ◽  
...  

Author(s):  
ST Lang ◽  
B Goodyear ◽  
J Kelly ◽  
P Federico

Background: Resting state functional MRI (rs-fMRI) provides many advantages to task-based fMRI in neurosurgical populations, foremost of which is the lack of the need to perform a task. Many networks can be identified by rs-fMRI in a single period of scanning. Despite the advantages, there is a paucity of literature on rs-fMRI in neurosurgical populations. Methods: Eight patients with tumours near areas traditionally considered as eloquent cortex participated in a five minute rs-fMRI scan. Resting-state fMRI data underwent Independent Component Analysis (ICA) using the Multivariate Exploratory Linear Optimized Decomposition into Independent Components (MELODIC) toolbox in FSL. Resting state networks (RSNs) were identified on a visual basis. Results: Several RSNs, including language (N=7), sensorimotor (N=7), visual (N=7), default mode network (N=8) and frontoparietal attentional control (n=7) networks were readily identifiable using ICA of rs-fMRI data. Conclusion: These pilot data suggest that ICA applied to rs-fMRI data can be used to identify motor and language networks in patients with brain tumours. We have also shown that RSNs associated with cognitive functioning, including the default mode network and the frontoparietal attentional control network can be identified in individual subjects with brain tumours. While preliminary, this suggests that rs-fMRI may be used pre-operatively to localize areas of cortex important for higher order cognitive functioning.


Author(s):  
Ilknur Icke ◽  
Nicholas A. Allgaier ◽  
Christopher M. Danforth ◽  
Robert A. Whelan ◽  
Hugh P. Garavan ◽  
...  

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